2PQA,1GM5,3DM3,3AMT,7PU7,7F6W,7QH8,5ZG8,1WYD,1B8A,7AP4,5GRO,5W25,1ASY


Conserved Protein Domain Family
tRNA_anti-codon

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pfam01336: tRNA_anti-codon 
OB-fold nucleic acid binding domain
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (see pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Statistics
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PSSM-Id: 484837
Aligned: 523 rows
Threshold Bit Score: 28.3431
Created: 21-Aug-2024
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2PQA_C  33 VTIVGIIRHA------EKAPTNIVYKIDDMTa-APMDVRQWVd------------------tDDTSSENTVVPPETYVKV 87  human
O54139  76 VSVTGTLRTVtl--rpRAGVPALEAELFDGS--AALDVVWLG-----------------------RRSIVGIEPGRKLIA 128 Streptomyces coelicolor
O07196  47 VTVVGTLRSVet--ngKGCSGGVRAELFDGS--DTVTLVWLG-----------------------QRRIPGIDTGRTLRV 99  Mycobacterium tubercu...
Q8R9U4  62 AYIAGSAREVk-----TSRVVITKIPVKDGT--GAVELVWYN----------------------QPYMKNNFKIGEEYII 112 Caldanaerobacter subt...
1GM5_A 168 VTTQGKIVSVet--kkFQNMNILTAVLSDGL--VHVPLKWFN--------------------QDYLQTYLKQLTGKEVFV 223 Thermotoga maritima
Q8SRS2 101 VQIIGWVVSS------KTSATGSMFVLEDGT--GSVDCTFWPg------------------nSYEEEQCKVLEEQNLLKV 154 Encephalitozoon cuniculi
Q9LMK5  41 VEIVGTIVSR------DLTPKFLKFGVDDGT--GCVTCVMWLnqltssyfsrwdpatilllaSAARKQAAQIRIGAVARV 112 thale cress
Q8Y686  59 ITIQGEVLTEatvafyGRKKSKLSFRVSTEG--QVIKIDFFN----------------------QPYLKSKISVGETVTI 114 Listeria monocytogenes
O34942  59 VTVEGKVHSEpsltyyGKKRNRLTFRLLVGH--YLITAVCFN----------------------RPYLKKKLSLGSVVTV 114 Bacillus subtilis sub...
Q819V2  59 VTVEGKVHSApl--lqYYGKKKSRLTVRVLVgrYLITAVCFN----------------------RPYYKQKLKLDETITI 114 Bacillus cereus ATCC ...
2PQA_C  88 AGHLRSF-QNK-KSLVAFKIMPL 108 human
O54139 129 SGRISMS-HGR-RVLFNPKYELR 149 Streptomyces coelicolor
O07196 100 RGRLGKL-ENGtKAIYNPHYEIQ 121 Mycobacterium tuberculosis
Q8R9U4 113 SGKLQFK-YGQ-LVVENPVLEKS 133 Caldanaerobacter subterraneus subsp. tengcongensis
1GM5_A 224 TGTVKSNaYTGqYEIHNAEVTPK 246 Thermotoga maritima
Q8SRS2 155 NGSLRTF-NGK-RSVSASHLSAV 175 Encephalitozoon cuniculi
Q9LMK5 113 RGRVGSY-RGV-MQITANVAVAE 133 thale cress
Q8Y686 115 SGKWDKS---R-AQVTASKIKIG 133 Listeria monocytogenes
O34942 115 SGKWDKH---R-QTISVQELKNG 133 Bacillus subtilis subsp. subtilis str. 168
Q819V2 115 TGKWDQH-RQT-IAVSELHFGPV 135 Bacillus cereus ATCC 14579
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