2MNA,3DM3,1GM5,1EOV,3NEN,1WYD,5W25,5GRO,6SJC,5ZG8,2PI2,6AGG


Conserved Protein Domain Family
tRNA_anti-codon

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pfam01336: tRNA_anti-codon 
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OB-fold nucleic acid binding domain
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (see pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Statistics
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PSSM-Id: 426208
Aligned: 542 rows
Threshold Bit Score: 29.8863
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2MNA_A  15 VNVTVRVLEASearq-iqtKNGvRTISEAIVGDET-GRVKLTLWG----KHAGSIKEGQVVKIEnAWTTAF-------KG 81  Saccharolobus solfata...
Q4Q884  23 WWIRARVTDKTdirtwnkpTSQ-GKLFSFTLIDES-AAIRATVFNdavdTFEPLIVNGQVYYFSgGQVKNA-------NR 93  Leishmania major
Q8SR55 227 WAIKGRVVMKSdirrftnqKGE-GKVFNFEVSDGT-AQVKIICFSdcvdIFFPIVEVGKVYTIAkGTVKMA-------NK 297 Encephalitozoon cuniculi
Q7TP21 184 WTICARVTNKSqirtwsnsRGE-GKLFSIELVDES-GEIRATAFNeqvdKFFPLIEVNKVYYFSkGTLKIAnkqfsavKN 261 Norway rat
Q9FME0 194 WTIKVRVTNKGvmrnyknaRGE-GCVFNVELTDEEgTQIQATMFNdaarKFFDRFQLGKVYYISrGSLKLAnkqfktvQN 272 thale cress
Q10Q08 199 wIIKVRVTSKGnlrtyknaRGE-GCVFNVELTDVDgTQIQATMFNeaakKFYPMFELGKVYYISkGSLRVA-------NK 270 Japanese rice
Q9GYL8  18 FIIYGQISFI---------KSV-RNASIFKVTDSDrDTIKCVAFGatgdWCNKELKLKQFCYVLgGKVQPI-------DK 80  Caenorhabditis elegans
O97472 236 FRIHGMVSRKEdik--nipAKN-MKIFNFEITDSNgDTIRCTAFNetaeSFHSTITENLSYYLS-GGSVRQ-------AN 304 Caenorhabditis briggsae
Q9GYL9 133 FKIHGRVTLMDd------kRRP-EKVFSFEITDVNgYTIRCVAFGelgvRLYGSIAKDQSYYLT-GGKVKN-------GH 197 Caenorhabditis elegans
Q9GYL8 127 FKIHGRVTLMDtr----ppHHY-QKRFNFEITDFNgDTIACSASSpeadVFYQNLVKEQSYYLAgGHIKKGhei--ynQT 199 Caenorhabditis elegans
2MNA_A  82 Q----------VQLNAGSKT 91  Saccharolobus solfataricus P2
Q4Q884  94 R----------FSNVNNDYE 103 Leishmania major
Q8SR55 298 Q----------YSTNPFDYE 307 Encephalitozoon cuniculi
Q7TP21 262 D----------YEMTFNNET 271 Norway rat
Q9FME0 273 D----------YEMTLNENS 282 thale cress
Q10Q08 271 Q----------FKTVHNDYE 280 Japanese rice
Q9GYL8  81 N----------YNIYPNDEF 90  Caenorhabditis elegans
O97472 305 KkfnntghdyeITLRNDSVV 324 Caenorhabditis briggsae
Q9GYL9 198 Tlynq--tghaFEIILDEFP 215 Caenorhabditis elegans
Q9GYL8 200 Gi--------dYQIDLNNFT 211 Caenorhabditis elegans
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