1JCU,2MX1


Conserved Protein Domain Family
Sua5_yciO_yrdC

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pfam01300: Sua5_yciO_yrdC (This model is not part of the current CDD release)
Telomere recombination
This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
Statistics
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PSSM-Id: 514166
Aligned: 99 rows
Threshold Bit Score: 131.131
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JCU_A        21 SVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSpHKPVSICVS-----CVDEIPRFSr--PSGD-AMELMERil 92  Methanothermoba...
WP_003516915 214 NIIESGGIIAVKGIGGYHFACSPFLEDTVLRLRELKGRE-AKPFAIMFE-----SVDSIRKYCvvsEKEEeLLKSKAR-- 285 Acetivibrio the...
WP_011986402 252 ELIKKGYIVAVKGIGGFHLVCDGKNKKAIENLRIRKKRP-HKPLAIMCK-----DLKIVKELCyvsKLEEqILEGTKK-- 323 Clostridium bot...
Q97TF8        60 KLLKSANILAIKDTGGFYLICNGKSRAAINTLRRRKMRQ-SKPFAVMMK-----DIYTVREFCevhSEEKkVLESSER-- 131 Clostridium ace...
Q97KV6       208 KKLKEGKIFAIKGLGGFQLVCDAENEEAIKKLRQKKNRQ-HKPFAVMVK-----DIETAKKYCsvnYKEEkLLKSKVK-- 279 Clostridium ace...
O28905       197 NALDSGKIIAIKGIGGYHIAC-LTEDDVVLRLRKLLNRP-QQPFAVMVR-----DLSSAERVAelsNEERaELLSPAR-- 267 Archaeoglobus f...
Q8TXL4       209 ELIEEGKIVAIKGIGGFHLACKTTEDEPVAKLRERLGRP-QQPFAVMSG-----SLDDVRTFAevdGTAEdLLTGPVR-- 280 Methanopyrus ka...
Q6M0X8       211 kFLEEGKILAIKGIGGTHLVCSINSDKSVLELRKRLNRP-TQAFAIMSR-----E-EYLDLFSkidENELnMIKSPKK-- 281 Methanococcus m...
3_pfamImport   1 RLLLGGEVIAAKGIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFR-----DLEHLQVYTatePMEErCLVSWRR-- 72 
Q2Y8F5       219 TALRRGEIVAVKGIGGYHLMCDARNETAIGQLRTNKHRP-HKPLALMFPwcgddGLAQVRDELeidAQGQaLLRAPAR-- 295 Nitrosospira mu...
1JCU_A        93 pgPYTVVLERn-El-IPDVItgGSSRVGIRVPDDEICRRIAARF--P----VTATSANISGKPPSPRLEEIVRDL-DAVD 163 Methanothermoba...
WP_003516915 286 --PIVLLYLKn-Ns-MAPSAcqGSIYCGAFLPYTPLHMLLVKrc-----gpLIMTSANISDKPIIKDDSEMLSLKsPLLN 356 Acetivibrio the...
WP_011986402 324 --PILILKKKatNi-LPDNIspFNKHLGVMLPYSPLHYLLFKEGldI----IIATSGNVSGRPMEYKNCEAIENLkTIAD 396 Clostridium bot...
Q97TF8       132 --PIVILDKKpsLn-LPNNIspNLKSIGVMLPFSPISRLMLQKDld----vLIITKSS----NIELKNETAFKNLkNIAD 200 Clostridium ace...
Q97KV6       280 --PIVILNRSnyNk-IPKVIapYQKTLGVMLPYTPLHYLLFSDDie----vLIMTSANAHGLPLEYKNESAIDKLgNIAD 352 Clostridium ace...
O28905       268 --PIVVVRKKlp----fEAVapELDTIGIMLPYTPLHHLLFQELka---dyLVMTSANLPGEPMYID-ESIMEKMe--LD 335 Archaeoglobus f...
Q8TXL4       281 --PIVVLPKKepFp-LSELVapGLHTVGVMLPYTGLHHIMFERF--LdepaIVMTSANPPGEPMAIRNSDALRHLrGIAD 355 Methanopyrus ka...
Q6M0X8       282 --PIVALKKNelYekYFSEHvsNLNTIGVMLPYSGLHYLLFENTdqIa---YIMTSANLPGLPMSIDNEQILEKLeNIAD 356 Methanococcus m...
3_pfamImport  73 --PIVLLRQR--Sr-LASGInpGMHTLGCMLSYMPIHYDWFART--Gip-aLVMTSGNLSDLPIAITPEDAEAQLaGKVA 144
Q2Y8F5       296 --PIVLLRRRrdSm-LPRSItpGIREIGVMLPYSPLHHLLLHEld----kpVVATSGNVSGEPVLTANAEAETRLaRVTR 368 Nitrosospira mu...
1JCU_A       164 LVLDAGd-CLDMEPSTVIDLTvnPPRVLRRG 193 Methanothermobacter thermautotrophicus
WP_003516915 357 GVLYNKrrIVRSVDDSVAKVVanSPQLIRRS 387 Acetivibrio thermocellus
WP_011986402 397 YFLIHNrdIHTPIDDSVVKVInkKESLIRIG 427 Clostridium botulinum
Q97TF8       201 YFLIHNreISVPLKTPVVYLInhSKCVLNQS 231 Clostridium acetobutylicum
Q97KV6       353 YFLQHNrdINVPIDDSIVRVVngQECVIRRA 383 Clostridium acetobutylicum
O28905       336 GFLVHNleIANRVDDSVVKYVggRRLLIRRS 366 Archaeoglobus fulgidus
Q8TXL4       356 YYLVHDrrIAARCDDSVVRVLdgRPRSLRRS 386 Methanopyrus kandleri
Q6M0X8       357 YFLLHNrkIVNRCDDSVLKEIngKMELLRRS 387 Methanococcus maripaludis
3_pfamImport 145 ILLHHNrpIHNRVDDSVLQVCggQPCLIRRS 175
Q2Y8F5       369 VFLHHNrpIARPADDPVVRVIagKPRLVRVG 399 Nitrosospira multiformis ATCC 25196
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