4GD3


Conserved Protein Domain Family
Ni_hydr_CYTB

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pfam01292: Ni_hydr_CYTB 
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Prokaryotic cytochrome b561
This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.
Statistics
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PSSM-Id: 426183
Aligned: 80 rows
Threshold Bit Score: 34.81
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GD3_B         13 VFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYlf--------yMGYirliHFSAGMVFTVVL-LMRIYWAfv 83  Escherichia co...
Q2W2V7        500 IRAGAFRLWHRANAVLMSVLAVTGLFLHFAGTPAALLR-------------LEWafglHKWSGLTLVAAYgAFLGLTA-- 564 Magnetospirill...
Q726G3          8 LYTRFERFWHWAQTLLILVLLVTGFEIHGTYRLFGFETA------------FTV----HNACAWTWFVLY-AFIVFWMat 70  Desulfovibrio ...
WP_001069984   68 LYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSL-----------VAV----HEVCGFLLLACWlGFVLINAvg 132 Enterobacteria...
WP_011939563    9 LQPTPVRIWHWLNALGIVTLCITGAQIRFPEYLAIFGSYKt---------aILL----HNTAGIVVAVSFsLWFFYYKmi 75  Geobacter uran...
Q24SH5         15 RQNLVNRFVHWTTALAIFLLILTGFGQMPLYNRYNVTKLPgaewlgdyfitINL----HYLAAVLLIFVV-FYHIINAfi 89  Desulfitobacte...
jgi:Spea_0259  78 RHDGIARLTHWTAAFGCLLLLITGIALGFLFIPRFVVDATata------mmFNL----HFVGALFFVFGCgLWASNQLve 147 Shewanella pea...
WP_008047287    8 ASNWLVRLGHLLFVLSIIPLLLTGLRIAVANEPALIRFSMllpq----gnvHQW----HFYAAMGFGVATlLYSIGRV-- 77  Reinekea bland...
Q89C01         31 RTDVGTITLHWATALAFVVSLVTGIRIAADALRAPFSKWLapvlp--qgeiFSW----HFLAGLAVFFCGsAYVAYLArs 104 Bradyrhizobium...
Q3M4T2         30 YQPLLLKILHGVSGFLAIAAIITGFLVYNTFDGRFGKLPIpri-----gesIDI----HGTFAVFFFFVFpALALYSFha 100 Trichormus var...
4GD3_B         84 gnrysrelfivpvwrkswwqgvwyeirwylfLAKRPSADIGHNPIAQA------AMFGYFLMSVFMIITGFAlysehsqy 157 Escherichia co...
Q2W2V7        565 --------------------------------------LFRRRWRANA------EGMVMFVLMPALVVTGLAflwpvl-- 598 Magnetospirill...
Q726G3         71 tgewkhyvptfl------klmdvvryyvsgiFKGEPHPVPKSERSKHNplqrltYLGIVSVLVPFQMVTGFLyytynqw- 143 Desulfovibrio ...
WP_001069984  133 dnghhyrirrqgw---leraakqtrfylfgiMQGEEHPFPATTQSKFNplqqvaYVGVMCGLLPLLLLTGLLclypq--- 206 Enterobacteria...
WP_011939563   76 agtllklyvpnqee-lqhgllrqaifyffryFRGDPSPHHATPDNKFNpmqksaYLAIMFVLMPLVSLTGILlmnvtp-- 152 Geobacter uran...
Q24SH5         90 rkefdifprrg-------dfkesyliikamiTKCKEPPCGKYLAEQRL------AYFYIGFNVLLLIITGLIkmyknl-- 154 Desulfitobacte...
jgi:Spea_0259 148 prrfsthlpdeslw--ielkksvlhythmlgMTKTHVEAPKYHHSGRL------AGLVIMASSFVVILSGFGkllar--- 216 Shewanella pea...
WP_008047287   78 -------------------------------RRKRLPRLTHPKKTMQWfn---aTHYLAWGLLFVSLLTGLQlis----- 118 Reinekea bland...
Q89C01        105 glvern------------------spkktriLAMRAPARLKWGAVNII------LHWFVYALVIFLTGTGVMm------- 153 Bradyrhizobium...
Q3M4T2        101 gnrkl-------------------lqqdslqNLTQFGRPIWWVSLQRI------ANTLMLIAAVLAVLSGRMmkee---- 151 Trichormus var...
4GD3_B        158 aifapfryvveffywTGGNSMDIHSWH-RLGMWLIgAFVIGH-VYMALREDIMSddtVISTMVNG 220 Escherichia coli K-12
Q2W2V7        599 ---------lpqepqKVNGIAWVAVVHtVLAIALL-MYLIHH-LGTAPVQWWRKr---kARAFGG 649 Magnetospirillum magneticum A...
Q726G3        144 ---------pafgfaGALTLQVVAVLHtVGAFAFL-AFVIVH-VYMTTTGHTLTa--HIKAMFTG 195 Desulfovibrio vulgaris str. H...
WP_001069984  207 ----------avgdvFPGVRYWLLQAHfALAFISL-FFIFGH-LYLCTTGRTPHe--TFKSMVDG 257 Enterobacteriaceae
WP_011939563  153 ---------lrelvlLSGGLKILVSGHfLLASSLC-AFLFTH-VYLATLGHSPMa--HIKPMWTG 204 Geobacter uraniireducens
Q24SH5        155 ----------pgvelPYSLLFWTTMLHnIGTVLLI-LGIIGH-LAAFIFKENRA---LLPGMFTG 204 Desulfitobacterium hafniense Y51
jgi:Spea_0259 217 -----------gldlNPSIAELINLSHgWSALALL-LLIPVHaLLGGVAPWAWN---TLKAMVTG 266 Shewanella pealeana ATCC 700345
WP_008047287  119 -------------qfSILPVDLTLRLH-LISALLFvIYLLIH-TVLAFVALPWQ---TVLRFFSL 165 Reinekea blandensis
Q89C01        154 ---------------YLGYGGWWAYLHsTAAFVAL-VYIFAH-VVAHFLYGGWQ---QIFRVFRP 198 Bradyrhizobium japonicum
Q3M4T2        152 ------------wlpTGELNHAWYYLH-LIGWLVIvACLAIHiLMSSKVGGVp----LLLSIFSW 199 Trichormus variabilis ATCC 29413
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