3S5B,7R6V,6NJU,1ZM8,1QL0,5FGU


Conserved Protein Domain Family
Endonuclease_NS

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pfam01223: Endonuclease_NS (This model is not part of the current CDD release)
DNA/RNA non-specific endonuclease
Statistics
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PSSM-Id: 514101
Aligned: 61 rows
Threshold Bit Score: 68.9907
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3S5B_A        11 RSAEIMKHGYPGFTNv---rTYEDFVLSYDYK--TRTAHWVCEHLTPERLKHAeGVD---R-------KlC------EFK 69  Caenorhabditis ...
Q9VU24       166 STSYLYRVGYDTGDGr----FVATMELCHDPN--QLRTHYAHHQLTPANVHFQ-KKL---K-------R-P------RFS 221 fruit fly
O33735        73 RTTERVYKKSGQSTKpv-----tVSNIHYSVLdgYGRSGEAYGIITKDMIDMSaGYRe--K-------W-EskpepsGWY 137 Streptococcus p...
2_pfamImport   1 ETSPNYYKVLGESGIve-nlFPPKGQIVYGGLdsLGRTLTVRGTLTFNNVLGSyNIRkdfK-------R-SkaetlsGWL 71 
Q7DAK9        70 NDSPNYYKTLGTSQItp-alFPKAGDILYSKLdeLGRTRTARGTLTYANVEGSyGVRq--S-------F-GknqnpaGWT 138 Streptococcus p...
3_pfamImport   1 SGGKAAIEVNNGQSSld-iaTWKENKVIYGDLdsLNRTTFVTAYLDRKNLGRSeG-----R-------E-RqvwqptGWH 66 
Q8E067        86 QSGAFIINQNKTDLNak-vsSAPYAINEIKKVnnQIVPTKANALLTKATRQYRnREEt-gN-------G-RtywkpaGWH 155 Streptococcus a...
Q9CJ50        41 NSSQVSTKSLASSVKqapltFKNQRQMVMANTdaLGRAVDSHIQLKDSQEPKVk------R-------E-PltynpvGWH 106 Lactococcus lac...
Q7QH21        92 DNGTIVRVGFSVDEAr----FAALYEVCFDER--NLRTHYTKHRLTPHNDHHQ-RAV---K-------R-P------SFL 147 Anopheles gambi...
5FGU_A       248 RTTERVYKKSGQSTKpv-tvSNIHYSVL-DGY---GRSGEAYGIITKDMIDMSaGYR---EkweskpeP-S------GWY 312 synthetic const...
3S5B_A        70 PDITFPQK-FLSQ-NTDYK--------------------------CS-------G-----------------FDRGHLAA 97  Caenorhabditis ...
Q9VU24       222 TAGHFTGFdMARI-YSPKS--------------------------QEklmvpgli----------dvksglfLARGHLTA 264 fruit fly
O33735       138 SYFFKNTNqRATEsDYKHS--------------------------PKnvskisnNikasillsngnvrngylFDRSHLIA 191 Streptococcus p...
2_pfamImport  72 GNKNGEVYvIKGLgDDSYQ--------------------------GYf------------------------WNKSHLIA 101
Q7DAK9       139 GNPNHVKYkIEWLnGLSYV--------------------------GDf------------------------WNRSHLIA 168 Streptococcus p...
3_pfamImport  67 QKQIDGDPi---------------------------------------------------------------VNRGHLLA 83 
Q8E067       156 QINGLKGSyNHA------------------------------------------------------------VDRGHLIG 175 Streptococcus a...
Q9CJ50       107 NYNFYYKKsDGSIgkm------------------------------------------------------wlMARGHLVG 132 Lactococcus lac...
Q7QH21       148 QGEFYGDLkMATL-YSFAA--------------------------QHatlarilSsparadal-lsskkglfFARGHLAA 199 Anopheles gambi...
5FGU_A       313 SYFFKNTN-QRAT-ESDYKhspknvskisnnikasillsngnvrnGY-------L-----------------FDRSGLIA 366 synthetic const...
3S5B_A        98 A-GNHRK------SQLaVDQTFYL-SNMSPQVGrGFN--R--DK-------WNDLEMHCRRV--AKKM-InS-YIITGPL 154 Caenorhabditis ...
Q9VU24       265 K-ADLIY------ASQ-QKSSFNY-MNVAPQWQ-SFN--G--GQ-------WSKLEESTRQY--VARS-GiTaTVYTGIY 320 fruit fly
O33735       192 D------------SLGgRPFRNNLiTGTRTQNV-GNNdrK--GG-------MQYIENKVLDH--IKRNpKvHvYYKATPV 247 Streptococcus p...
2_pfamImport 102 D------------SLGgDALRVNAiTGTRTQNV-GGRsgN--GG-------MRYTEIKSQKW--LEAHrDgYlYYEAMPI 157
Q7DAK9       169 D------------SLGgDALRVNAvTGTRTQNV-GGRdqK--GG-------MRYTEQRAQEW--LEANrDgYlYYEAAPI 224 Streptococcus p...
3_pfamImport  84 YtSSFNFdidgnfKIGeNGSQDNP-KNLATQTA-FSN--Q--KV-------QTHYEKLVRDAqkLK---GnKvIYQIVTV 147
Q8E067       176 Y-ALVGS------LRGfDASTSNP-KNIATQAA-WAN--QanSNqs---tgQNYYETLVRKA--LDR--HkTvRYRVTLI 237 Streptococcus a...
Q9CJ50       133 Y------------QFSgLNNEA---RNLVPETA-WFNggNftGTndgntasMLYYENRLDSW--LANHpNyYlDYQVTPL 194 Lactococcus lac...
Q7QH21       200 K-SDFVF------GAH-QRASFWF-MNVAPQWQ-RFN--G--FS-------WQRIESGVKAY--VAAN-DlRlTVYTGTY 255 Anopheles gambi...
5FGU_A       367 D------------SLGgRPFRNNLiTGTRTQNV-GNNdrK--GG-------MQYIENKVLDH--IKRNpKvHvYYKATPV 422 synthetic const...
3S5B_A       155 YLPKLEgdgkk----yikyQVIGDn--NVAVPTHFFKVALFEVT-Pg------kFELESYI---LPNAVI-----EDTVE 213 Caenorhabditis ...
Q9VU24       321 GEMKVAgskvl----hmttNANNIg--VVAVPQLFYRVLIDEGHpTrgia-lvgVNNPHATlaqIHESYIicdpvEESVQ 393 fruit fly
O33735       248 YQGSEL------------------------LPRAVLVSALSSDG------------------------------------ 267 Streptococcus p...
2_pfamImport 158 YQGNEL------------------------VPRAVVVSVLSSDN------------------------------------ 177
Q7DAK9       225 YNADEL------------------------IPRAVVVSMQSSDN------------------------------------ 244 Streptococcus p...
3_pfamImport 148 FRGKEL------------------------MPRGYWLQAIDSAG------------------------------------ 167
Q8E067       238 YDRDNL------------------------LSSGSHIEAKSSDG------------------------------------ 257 Streptococcus a...
Q9CJ50       195 YEGNEL------------------------LPRQIRLAYVGIDKn---------GQTLSIKlggGREKSG---------- 231 Lactococcus lac...
Q7QH21       256 GVLKLLdgngdgqeifldyDANREpagKVPAPALFYKVLLDEAN-Dagla-lvgVNNPHATpeeIAADYVvckdvSDAVR 333 Anopheles gambi...
5FGU_A       423 YQGSEL------------------------LPRAVLVSALSSDG-FidetvrvfNNVAGFN---IDYQNG-----GLLS- 468 synthetic const...
3S5B_A       214 ISKFhvpldAVERS-AG--LEIFARLD 237 Caenorhabditis elegans
Q9VU24       394 WLSWlhksnAKGNLkNG--YLYACSVA 418 fruit fly
O33735       268 --FIdetvrVFNNV-AGfnIDYQNGGL 291 Streptococcus pyogenes
2_pfamImport 178 --TInekviVYNVA-NGytIDYNQGTF 201
Q7DAK9       245 --TInekvlVYNTA-NGytINYHNGTP 268 Streptococcus pyogenes serotype M1
3_pfamImport 168 --TLnfnvyEYNVQ-PNvvFNYEEGTS 191
Q8E067       258 --SLefnvfIPNVQ-SGllFDYATGKV 281 Streptococcus agalactiae serogroup V
Q9CJ50       232 --NGgatvvVLDNVaPNakINYADGTA 256 Lactococcus lactis subsp. lactis
Q7QH21       334 WLRW-----DRNSIeDG--YVYACDVN 353 Anopheles gambiae str. PEST
5FGU_A       469 -STAdvdinNVEEneiettddeieegi 494 synthetic construct
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