Conserved Protein Domain Family
RNA_pol_L

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pfam01193: RNA_pol_L (This model is not part of the current CDD release)
RNA polymerase Rpb3/Rpb11 dimerization domain
The two eukaryotic subunits Rpb3 and Rpb11 dimerize to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerization domain of the alpha subunit/Rpb3 is interrupted by an insert domain (pfam01000). Some of the alpha subunits also contain iron-sulphur binding domains (pfam00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Statistics
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PSSM-Id: 514075
Aligned: 351 rows
Threshold Bit Score: 73.5818
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003058267  92 EFEMQGLSPAIANAFRRILIaEVPTMAIEKVFMVNntsviqdevfahrlglipiradprlfdlrgegdtptekntivfkm 171
XP_002953467  12 TFSIEEEDHTLANSLRFFLN-KNPHVSFCGYSMPH--------------------------------------------- 45 
XP_004989949  40 TFVIANEDHTLGNSLRWILN-RDPRVDFCGYSQPH--------------------------------------------- 73 
NP_001155573  19 TFVFEDEGHTLGSLLTYVLE-SFPETDFCAYSIRH--------------------------------------------- 52 
XP_007392891  32 TFKIVKEDHTLGNLLRAELL-KDSRCLFAGYKVPH--------------------------------------------- 65 
XP_002682669  31 NFIVNKEDHTLGNIIRMRLH-EDKRVLFAGYRNPH--------------------------------------------- 64 
CBJ33676      79 TFEIIKEDHTLGNLLRMQLL-ADRQVRFAGYMQPH--------------------------------------------- 112
XP_001329625  37 TFTVQKEDHTLGNLLTDQLL-TENRILFAGYRIEH--------------------------------------------- 70 
XP_011120487 102 TFTFNKEDHTLGNLLRSQLL-KDPKVLFAGYKVPH--------------------------------------------- 135 Orbilia oligosp...
XP_002260840  17 TFCFENEDHTLGNCLRCILL-QKEGVEFAGYTVPH--------------------------------------------- 50  Plasmodium know...
XP_003058267 172 cvkctrekttdgtkgalindkvytdslvwlpngselppdeetkftqfscdqgeylkkrnkeskelgekeyfnrngkdpnv 251
XP_002953467     --------------------------------------------------------------------------------    
XP_004989949     --------------------------------------------------------------------------------    
NP_001155573     --------------------------------------------------------------------------------    
XP_007392891     --------------------------------------------------------------------------------    
XP_002682669     --------------------------------------------------------------------------------    
CBJ33676         --------------------------------------------------------------------------------    
XP_001329625     --------------------------------------------------------------------------------    
XP_011120487     --------------------------------------------------------------------------------     Orbilia oligosp...
XP_002260840     --------------------------------------------------------------------------------     Plasmodium know...
XP_003058267 252 istvhddillvkmvagqeieleahctkgdgkehakwspvgttwyrmvpqvtfpsgpltgedadvfmrecadfddahacye 331
XP_002953467     --------------------------------------------------------------------------------    
XP_004989949     --------------------------------------------------------------------------------    
NP_001155573     --------------------------------------------------------------------------------    
XP_007392891     --------------------------------------------------------------------------------    
XP_002682669     --------------------------------------------------------------------------------    
CBJ33676         --------------------------------------------------------------------------------    
XP_001329625     --------------------------------------------------------------------------------    
XP_011120487     --------------------------------------------------------------------------------     Orbilia oligosp...
XP_002260840     --------------------------------------------------------------------------------     Plasmodium know...
XP_003058267 332 rvgsdrrvvaknergcefcvervralsgepgweeKVQLLkkkdhFIFTVEST-GQM------PPELIFKEAVNVLASKC 403
XP_002953467  46 ----------------------------------PSEEL-----VNLRVQ-----Ttg--qiTAMQAVKAACEDMQQVC 78 
XP_004989949  74 ----------------------------------PSDKL-----IKLRVQPK-PVEegeepvDATEVLRDALKNLMQMC 112
NP_001155573  53 ----------------------------------PSENK-----IYLRLKVKnGHS-------VEDIFKRGFQELNQIL 85 
XP_007392891  66 ----------------------------------PLHPY-----FLLKVQ-----Sdg--svTASKLVTDACQSLLEKL 98 
XP_002682669  65 ----------------------------------PLEHH-----IEIKIQ-----Ttd--diEPRDALVGTIDSLIRDF 97 
CBJ33676     113 ----------------------------------PLENK-----IHIKVQ-----Tng--dnTPVDALSAATEDLSQEM 145
XP_001329625  71 ----------------------------------PTKDL-----IKIRVK-----Asqn-vnHPKELIDPAIEALKTKI 104
XP_011120487 136 ----------------------------------PLFPS-----FELRVQ-----Ttd--etNPRAAVIKAAQDLIKDL 168 Orbilia oligospo...
XP_002260840  51 ----------------------------------PTQAE-----INLRIQ-----Ttg---ePAVNILKDALDDLSNIC 82  Plasmodium knowl...
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