2KDO,6FSW,1NYN


Conserved Protein Domain Family
SBDS_N

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pfam01172: SBDS_N (This model is not part of the current CDD release)
Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants, including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this entry play a role in RNA metabolism. In yeast these proteins have been shown to be critical for the release and recycling of the nucleolar shuttling factor Tif6 from pre-60S ribosomes, a key step in 60S maturation and translational activation of ribosomes. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition.
Statistics
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PSSM-Id: 514059
Aligned: 231 rows
Threshold Bit Score: 46.2564
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2KDO_A         19 VVRMKRaGKR---FEIAC-YKNKVVGWRSGVEKDLDEVLQTHSVFVNV-SKG-----QVAKKEDLISAFGTDDQTEICKQ 88  human
Q9P7K6         10 RVCYQPeDTt--fIIIASnGPD-VMRWRKDKTVPLTEIVDSFQVFTTSnNKGnegqlITASKQELENTFGTSKDVDVVTK 86  Schizosaccharo...
XP_025189414    6 RVIYRPkNTReeyFVFAY--PDEVTKWRKDKSIPLTDVIQTFDVFESPn--GsegmaGRASKQSLENIFNTSKDTEVINY 81 
25_pfamImport   3 KIHYKG--KId-dFIVFIeSTEAANDWKKNKETSLANVVASYDIFVTG-KHGaqgslGKPSMAVLENEFGTSIKEEIIKK 78 
XP_050467555   10 KVFYKG--RTe-dFVIMVeDAAAVQKWRGDHSIPLAQVLDGWKIFTA--QHGpqgihNEASNATVENEFGTSNDNEAIAK 84 
EPS26211       10 KVYYKG--RTe-dFVIFVaDITAVENWRKYRTLPLAQVMDGWKIFTSH-QHGpqgmhNEASRDTLEREFGTSNDQEVIFH 85 
Q0U264         10 KVFYQG--SSe-gFVVFVeSEELVRKWKGDKSIPLTEVVAGWKIFTS--EHGkqgilNGASHLQLENEFGTKNEDDVVKQ 84  Parastagonospo...
XP_003841309   10 QVFYKG--SSgdqFTVFIdSEEELKKWKADSSIPLTSVVAGWKILVP--EHGkqgilNTASKQQLENEFGTSNEDEIIKK 85 
XP_008020701   10 QVFYKG--SSgeqFTVFVeSEEMLKKWKGDSSIPMTDVVAGWKIMVP--EHGkqgilNTASKGQLENEFGTSNEDDVMKK 85 
4_pfamImport    2 QVFYKG--SSgdqFTVFIeSEEMLKKWREDSSIPMTEVVAGWKILVP--EHGkqgilNTASKSQMENEFGTSNEDDVVKK 77 
2KDO_A         89 ILTKGEVQVSDK 100 human
Q9P7K6         87 ILTDGKIIPHRE 98  Schizosaccharomyces pombe 972h-
XP_025189414   82 ILEHGIIQNHRK 93 
25_pfamImport  79 IIEKGTIQESDG 90 
XP_050467555   85 ILDQGEIQENIN 96 
EPS26211       86 MLEKGEIQESFN 97 
Q0U264         85 ILEKGDVQTSEN 96  Parastagonospora nodorum SN15
XP_003841309   86 ILTSGSVQSSEN 97 
XP_008020701   86 ILTDGSVQSTEN 97 
4_pfamImport   78 ILKEGSVQSSEN 89 
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