Conserved Protein Domain Family
Syndecan

?
pfam01034: Syndecan (This model is not part of the current CDD release)
Syndecan domain
Syndecans are transmembrane heparin sulphate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
?
PSSM-Id: 513945
Aligned: 12 rows
Threshold Bit Score: 87.8807
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_009017057 246 SIFNspVILALIIGGVILSMLIFVLVVMFIVYRLRKKDEGSYALDE-NLKkksK--NIE-Y-TKAPQAhnEF 312
Q8I4H9       222 TLAN--GFYAAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDE-PKQarpY--ASYgY-TKASTK--EF 285 Caenorhabditis elegans
EFX80810     316 SFFAqpGILAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYVLDE-PKRnspN--SNP-Y--NKNSR--EF 379
EDW02148      54 SFFAqpGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDE-PKRs-pA--NNS-YaKNANNR--EF 118
7_pfamImport   1 SILErkKVLVAVIMGWVESALFAAFLVILLIYGM-KKDEGTYTLEE-PNQ---A--SVT-Y--KKPDKqeEF 62 
6_pfamImport   1 GLLEnkEVLAGVIAGGIIGLAFAVLLVALMVYRMKKKDEGSYALDE-QKH---S--NGG-Y--QKPQKqeEF 63 
XP_006007744 136 SIFErtEILAAVIAGCSVGLLFAILLIVLLIYRMKKKDEGSYETGK-NPI----------Y-KKAPTN--EF 193
XP_028927254 142 SIFErtEVLAALIAGGVVGLLFAVFLILLLVYRMKKKDEGSYDLGK-KPI----------Y-KKAPTN--Ef 199 platypus
XP_003966085 214 NLWErtEVLAAVIACGVVGFLCAVFLLLLLAYRMKKKDEGSYDLGD-TKL---S--NAQ-Y-HKAPTK--EF 275 torafugu
XP_026696263 145 SFAQssQLMAALIIGGCVGLLFAVCVIMLLAYRMRKKDEGSYALDEqKKP---AspSAYqY-----SQgqEY 208 vase tunicate
P47951       244 gLLDrkEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEE-PKQ---A--NGGaY--QKPTKqeEF 307 Chinese hamster
XP_001919756 338 NILErkEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEE-PKQ---A--TVT-Y--QKPDKqeEF 400 zebrafish
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap