3C60,1R5V


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha 
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Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 425978
Aligned: 81 rows
Threshold Bit Score: 66.4456
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3C60_G          4 DHVGTYGISvyqSPGDIGQYTFEFDGDELFYVDLDKKETVWMLPEFGQLASFDP---QGGLQNIAVVKHNLGVLTKRSNS 80  house mouse
XP_019210807   23 GDVHINGCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIYPGa-yKQAVTELKVCRHNLKALRAVMKD 96  Nile tilapia
XP_019210809   23 GDVHINGCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIYPGa-yKQAVTELKVCRHNLKALRAVMKD 96  Nile tilapia
XP_011484642   26 EDFGILGCS-----DYDQEYMYALDGEEKWYADYKKETGVGPQLPLGGHFINPDg-yQFAKVYEQVCRRNLKALKKTTKG 99  Japanese medaka
6_pfamImport    1 EDIGITGCS-----DLDGEDMFGLDSEERWYADFSKGEGVYGTPPFIDPVTFEGf-ySQAVADLQTCKTSLDITRKSLKD 74 
XP_029695925   22 EDIGITGCS-----DLDGEDMFGLDSEERWYADFSKGEGVYGTPPFIDPVTFEGf-ySQAVADLQTCKTSLDITRKSLKD 95  torafugu
CAF91234       21 EDVHIRGCS-----DFDGEDMYGLDGEERWYADFKRGEGVYALPDFVDPLKFPEgtySQAVADQQICKINLGISRKGNKD 95  spotted green ...
8_pfamImport    1 EDIRIVGCS-----DFDGEYMHGLDGEELWYADFRRGEGVYAQPDFIDPIKY-EgfySTAVAVLQICKFNLGIFRKGYKD 74 
XP_014331012   23 DSFRVIGCS-----DTDGLDMMTLDGEEVWHADFIHETGVDTLPDFVSHPSFSGl-yEQSVGQQQLCKNNLKIIRTGLKD 96  southern platy...
11_pfamImport   1 IDINVIGCK---SDDPVAQDEAQLDGDEMFYADFDKKEMILTLPAFADSFGVDPgwvQGAIANRQICINNLEVAIKAENN 77 
3C60_G         81 TPAT 84  house mouse
XP_019210807   97 YPsn 100 Nile tilapia
XP_019210809   97 YPSN 100 Nile tilapia
XP_011484642  100 LQLE 103 Japanese medaka
6_pfamImport   75 MPPE 78 
XP_029695925   96 MPPE 99  torafugu
CAF91234       96 MPRE 99  spotted green pufferfish
8_pfamImport   75 MPRE 78 
XP_014331012   97 IPDP 100 southern platyfish
11_pfamImport  78 PPEN 81 
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