1K8I,4P46,1HDM,4I0P,2Q6W,4P4R,1I3R


Conserved Protein Domain Family
MHC_II_beta

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pfam00969: MHC_II_beta 
Click on image for an interactive view with Cn3D
Class II histocompatibility antigen, beta domain
Statistics
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PSSM-Id: 425967
Aligned: 26 rows
Threshold Bit Score: 94.6746
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1K8I_B         8 STCVLnDAGTPQD-FTYCVSFNKDLLACWDPDVGKIVPCEFGVlsrlaEiISNILNEQESLIHRLQNGLQDCATHTQPFW 86  house mouse
Q70IB5        43 gMCYF-TNGTEHVrLVARQIYNKEEILHFDSDLGEFVAVTELG-----RvCAEIWNTQKDLLAEFRAYVDTLCRHNYKet 116 cattle
Q1MTC8        29 QQCFYsTSDYSDMvYLASYSFNKVVDTQFNSSVGKFVGYTEQG-----LiFAENFNKDQAYLHQLKAQVDTFCRHNAQIW 103 zebrafish
1HDM_B         9 STCLLdDAGTPKD-FTYCISFNKDLLTCWDPEENKMAPCns-----laNvLSQHLNQKDTLMQRL-NGLQNCATHTQPFW 81  human
Q6MGA7        27 STCLLdDEGTPMD-FTYCISFNKDLLACWDPEEGQIVPCEYGVlfklaEfISNILNKEEGLIQRLKNGLQDCSTHTQPFW 105 Norway rat
XP_004018787  39 aDCYF-TNGTEKVrFVVRFIFNLEEYARFDSDLGMFVALTELG-----KpDAELWNNRPDILARSRASVDMLCRRNYKLg 112 sheep
4I0P_D        10 ADCYF-TNGTEKVqFVVRFIFNLEEYVRFDSDVGMFVALTKLG-----QpDAEQWNSRLDLLERSRQAVDGVCRHNYRLG 83  human
O35424        39 ADCYF-TNGTEKVhLLVRFIFNLEEYLHFDSDLGMFVALTELG-----EpDADQWNKRLDLLETSRAAVNMVCRQKYKLG 112 house mouse
BAF62996      39 aECHY-LNGTERVrYLVRYVYNRQEYAHFDSDVGKHVADTPLG-----EpQAEYWNSNAEILENRMNEVDTYCRHNYGVV 112 chicken
P23068         8 VECHF-LNGTERVrFLVRHVYNRQQYVHFDSDVGLFVADTVLG-----EpSAKLFNSQPDVLEKNRAAVEMLCNYNYEIV 81  chicken
1K8I_B        87 D 87  house mouse
Q70IB5       117 a 117 cattle
Q1MTC8       104 D 104 zebrafish
1HDM_B        82 G 82  human
Q6MGA7       106 N 106 Norway rat
XP_004018787 113 a 113 sheep
4I0P_D        84 A 84  human
O35424       113 A 113 house mouse
BAF62996     113 E 113 chicken
P23068        82 A 82  chicken
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