1ARO


Conserved Protein Domain Family
RNA_pol

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pfam00940: RNA_pol (This model is not part of the current CDD release)
DNA-dependent RNA polymerase
This is a family of single chain RNA polymerases.
Statistics
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PSSM-Id: 513870
Aligned: 184 rows
Threshold Bit Score: 289.411
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1ARO_P            450 KPIGKEGYYWLKIHGANCA---G----------VDKVPFPERIKFI--EENHENIMACA----KSPL-E-N---TWWAEQ 505  Escherich...
EDK47326          724 KPLGERGFYWLKYQLASLFk-pG----------KETSCEE----FF--EKHKNNILQAA----SNPL-DdEalrRWWLQA 781 
Q7Y2D9            426 RVLGKRGLYWLKVHVANSL---G----------CDKVYFDDRAAWV--DERWDDFQRALaegpENYP-------GLFPEA 483  Pseudomon...
dbos:SAR116_0395  432 KPITKDNLKHLYFQIATTW---GnqvsetderkTDKITLDERYKWV--EDNYEAILLAG----KDYV-AgF---EHWSKA 498 
Q7Y5R1            442 PVNGVEALKWFCINGANLW---G----------WDKKTFDVRVSNVldEEFQDMCRDIA----ADPLt-----fTQWAKA 499  Salmonell...
WP_010971451      444 PITNEEGADWLAIHGAGLW---G----------VDKCSMNERVEWV--MANQREILASA----ENPYd-----nRFWLTA 499  Agrobacte...
WP_012172130      418 PIGDGVAAGWLAIHGANVY---G----------YDKASLEDRISWV--EERNALIASVA----ADPWgEgF---EFWTEA 475  Azorhizob...
Q88KM4            423 KPLGEHGAKWLAIHGANVA---G----------YDKASLEDRVKWV--HDHQAEILAIA----ADPFq-----aRGWADH 478  Pseudomon...
P00573            450 KPIGKEGYYWLKIHGANCA---G----------VDKVPFPERIKFI--EENHENIMACA----KSPLe-----nTWWAEQ 505  Escherich...
Q6U7U3            583 EKVNEEGKFYLYIYGANSHnqnK----------ISKASFKDRIDWV--NKNYDKIINLD----RELI----------LTA 636  Monilioph...
1ARO_P            506 ------DSPFCFLAFCFEYAGVQH-------HGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLL-PSE----TV 567  Escherich...
EDK47326          782 ------DKPFQFLATCMEVAKVLKhlg-ngnNVATFICRMPIHQDGSCNGLQHYAGLARDDLGGRSVNLL-PLE----TK 849 
Q7Y2D9            484 ------ESPLCAIAGLLELRAAYAs-----gNPEGYRSGFIVHMDATCSGLQHYSAILRDEIGGAYVNLLpPGL----AK 548  Pseudomon...
dbos:SAR116_0395  499 ------DAPIQHLAACRELYLADQ-------HGEGYLCGLPIGFDGSNSGLQHYSMLMKWKEDAFKVNLV-PNH----PP 560 
Q7Y5R1            500 ------DAPYEFLAWCFEYAQYLDlvdegraD--EFRTHLPVHQDGSCSGIQHYSAMLRDEVGAKAVNLK-PSD----AP 566  Salmonell...
WP_010971451      500 ------EKPWQALAFCFEWQGYVA-------EGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLV-PSD----KP 561  Agrobacte...
WP_012172130      476 ------DKPWQFLAFCFEWAGFLR-------EGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLV-PSG----KP 537  Azorhizob...
Q88KM4            479 vgaqaiDKPWQFLAFCLEWKGYCE-------HGDRFVSKLPIAMDGSCSGIQHFSAMLRDEVGGAAVNLV-PSD----LP 546  Pseudomon...
P00573            506 ------DSPFCFLAFCFEYAGVQH-------HGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLL-PSE----TV 567  Escherich...
Q6U7U3            637 ------ESPFIFTAFCLNMREIHN--------NPNALIKTPVFLDASCSGIQHLAALMKDLELGANTNLI--EStieeKP 700  Monilioph...
1ARO_P            568 QDIYGIVAKK--------------------VNEILQAD--------A-IN--GT---------------DN-Evvtvtde 600  Escherich...
EDK47326          850 MDVYVEVRDL--------------------VEKKIRNDigtqlaapEeV-----------------------A------- 879 
Q7Y2D9            549 ADIYSRVLGL--------------------VNESLERDrapgaegeA-R---GY------------------A------- 579  Pseudomon...
dbos:SAR116_0395  561 QDCYSFIAEAdmnlaqrivdgecdelneneITNAIMDD--------C-------------------------H------- 600 
Q7Y5R1            567 QDIYGAVAQV--------------------VIKKn----------aLyMDadDAttftsgsvtlsgtelRAmA------- 609  Salmonell...
WP_010971451      562 NDIYATVASVliaklrdiaaacpedtttkeVKDKETKEnktivvesD----------------------GSmA------- 612  Agrobacte...
WP_012172130      538 QDIYARVAEValglvtafvcpngsttgtipNLSRLRKTwaehgideLdM-----------------------A------- 587  Azorhizob...
Q88KM4            547 ADVYGLVAKK--------------------VIERAIHDakhgtedvLkHdadgka--------yvqegtKNlA------- 591  Pseudomon...
P00573            568 QDIYGIVAKK--------------------VNEILQADaingtdneVv-TvtDEntgeise--kvklgtKAlA------- 617  Escherich...
Q6U7U3            701 GDIYERLLEP--------------------INKAINKFgeenieysM-------------------------L------- 728  Monilioph...
1ARO_P            601 ntgeisekvklgtKAL--AGQwlaygVTRSVTKRSVMTLAYGSKEFGFRQQVL---EDTIQPa----------IDSGkg- 664  Escherich...
EDK47326          880 -------------KAKliLQI-----LDRKLVKRPVMTTVYGVTRYGASEQIY---SRIKEMingieqnpaksSADDvll 938 
Q7Y2D9            580 -------------LLWdkAG------LSRSLTKKPCMTLVYGTTFKGVVDHCL---DYLDESgve------ipEGVP--- 628  Pseudomon...
dbos:SAR116_0395  601 -------------NWL--KHG-----ITRKQTKKNIMTWPYSVTLIGMADQNR---DDMEIItdkaeeedaphPFGEd-- 655 
Q7Y5R1            610 -------------SAWdsIG------ITRSLTKKPVMTLPYGSTRLTCRESVI---DYIVDLeekeaqkavaeGRTAnkv 667  Salmonell...
WP_010971451      613 -------------RKWlaYG------ITRKVTKRPVMTLAYGASEFGFREQVF---TDTVTPwkqaageafpfEGTG--- 667  Agrobacte...
WP_012172130      588 -------------NRWlaFG------IDRKVTKRAVMTLPYGSTQYSCREFIE---EAVREKveegkpnpfavGDSDg-- 643  Azorhizob...
Q88KM4            592 -------------QQWtrFG------INRKVTKRSVMTLAYGSKEYGFKDQVM---EDILDParkkatdaegnVDarhfp 649  Pseudomon...
P00573            618 -------------GQWlaYG------VTRSVTKRSVMTLAYGSKEFGFRQQVL---EDTIQPaidsgk------------ 663  Escherich...
Q6U7U3            729 -------------SLV----K-----LTRKEVKVPIMTKVYNVTKYGISNQLQsifKNIDEEifvdefytkpkNEIHndf 786  Monilioph...
1ARO_P            665 --------------lMFtqpnQAAGYMAK-----L-IWESVSVT----VVAAVEAMNWLKSAAKLLAA-Evkdkkt---- 715  Escherich...
EDK47326          939 sr---------lktfQQ----RDATYLVE-----K-IFAAIDDL----FKNAKRIETWLTHTANRINT-Synvktldyly 994 
Q7Y2D9            629 ---------------SY----RLGSYMAT-----L-ILDAIRET----VPSAVFAMEWLQRLAKALPD-A---------- 668  Pseudomon...
dbos:SAR116_0395  656 --------------rGS----SASMTLAK-----L-NSDSIKAV----VASGARGMEFLRDLAGILASrNvh-------- 699 
Q7Y5R1            668 hpfed---drqdyltPG----AAYNYMTA-----L-IWPSISEV----VKAPIVAMKMIRQLARFAAK-R---------- 719  Salmonell...
WP_010971451      668 ----------------F----AAASFLGL-----L-IWDCVGEV----VVAAAGAMDWLQKVAKIAAK-E---------- 706  Agrobacte...
WP_012172130      644 ---------------IF----KATLWLQP-----L-VWQAIGEV----VKAARVGMDWLKECARLAAA-E---------- 683  Azorhizob...
Q88KM4            650 -----------ftgdGF----RAAGWMAK-----A-IWEAVNQV----LVKAGEAMKWLQDAATLAAK-E---------- 693  Pseudomon...
P00573            664 ---------glmftqPN----QAAGYMAK-----L-IWESVSVT----VVAAVEAMNWLKSAAKLLAA-Evkdkkt---- 715  Escherich...
Q6U7U3            787 ldsfksnksktkficKG----KDGKYIRLsnkeiYkIASIINDQifvvFPSLNEIYNYFIELAKLAVKl----------- 851  Monilioph...
1ARO_P            716 ----------geilrkRSAVHWVTPDGFPVWQEYKKPIQ-------T-RLNL---------------MfLGQ---FRLQp 759  Escherich...
EDK47326          995 rlkrslkdtyitnpvnLAPISWISVSGFPVIQVYRDMPK-------V-QTQG---------------V-LGS---TSRD- 1046
Q7Y2D9            669 ----------------SKDLHWITPLGMQVFQSYPKTEE-------V-RVRL---------------R-AEA---VEYV- 704  Pseudomon...
dbos:SAR116_0395  700 -------------------aeWTSILGFPVGQDYRDMKK-------V-TINTeyidrkttrkvryrgT-LRA-------- 743 
Q7Y5R1            720 ----------------NEGLMYTLPTGFILEQKIMATEM-------L-RVRT---------------C-LMGd--IKMS- 756  Salmonell...
WP_010971451      707 ----------------SLPVIWNTPAGLKVMQEYTTSEQ-------K-RLEL---------------T-FQK---VRLQ- 742  Agrobacte...
WP_012172130      684 ----------------GLPVIWQTPDGFLVQQSYRNSSA-------R-RIDT---------------H-LDGr--VRLI- 720  Azorhizob...
Q88KM4            694 ----------------ELPVCWTTAVGFPVMQAYNSVVA-------R-RVKT---------------A-INGa-rVRLL- 731  Pseudomon...
P00573            716 ----------geilrkRCAVHWVTPDGFPVWQEYKKPIQ-------T-RLNL---------------M-FLGqfrLQPT- 760  Escherich...
Q6U7U3            852 ----------------ELPMTWITPSGLKITQNYFKRKKkvisisiFgKSKK-------------------------IV- 889  Monilioph...
1ARO_P            760 tiNTNK-DSE-IDAHKQESGIAPNFVHSQDGSH---LRKTVVW-AHEk-YGIeSFALIHDSFGTIPADAANLFKAVRETM 832  Escherich...
EDK47326         1047 --ASEN-FAP-MDRKKHELAIAPNFIHSLDASH---MAMTCSA-AAAenPSL-VFASIHDSYWTHACDVDRLSVILREQF 1117
Q7Y2D9            705 --TLYEaKDE-LDPMRNANGIAPNFVHGLDSSH---LGLTALA-CAA--EDI-PIQAIHDSMGTYASDVDRMHVHIREQF 774  Pseudomon...
dbos:SAR116_0395  744 -------KQPtCETKGSKNGIAPNFVHHMDSTH---LMMSVNK-SNE--YGAsNLMCVHDSFSTDIESASVMLDCIKVTL 810 
Q7Y5R1            757 --LQVE-TDI-VDEAAMMGAAAPNFVHGHDASH---LILTVCElVDK---GVtSIAVIHDSFGTHADNTLTLRVALKGQM 826  Salmonell...
WP_010971451      743 --LSIDvASKkIDKRKQGSGISPNWVHSMDAAH---MQLTVSR-CHD--EGIrSFSLIHDSYGTHAGNAWAMAQFLREEF 814  Agrobacte...
WP_012172130      721 --IREE-LDT-IDKRRQQQGVAPNWVHSMDATA---MRMFINLaLTN---GMqHFALVHDSYGTVAADVELMGACLRKAF 790  Azorhizob...
Q88KM4            732 --MNEE-QDA-LDKRKQSQGISPNFVHSCDAAH---LMLTVVRgVES---GLkSFAMIHDSFGTTAGETELFFMTVRKAF 801  Pseudomon...
P00573            761 --INTN-KDSeIDAHKQESGIAPNFVHSQDGSH---LRKTVVWaHEK--YGIeSFALIHDSFGTIPADAANLFKAVRETM 832  Escherich...
Q6U7U3            890 --IKEN-TDK-IDKGKQIQSIIPNIIHSLDATHlmnIIQNAIN------DNFnPVITIHDCFGTLPNYMGSLEYRVKKQF 959  Monilioph...
1ARO_P            833 VDTYeSS-DVLADFYDQFADQLHesq------------------------------------------------------ 857  Escherich...
EDK47326         1118 VEMY-SF-DYMEVVKRDFERQVRnsyqmvyfekkgngelyrkvkefrkqygeskikhqleielreldkvgyhnhtilmli 1195
Q7Y2D9            775 IAMY-SGpCVLVELAKQL-------------------------------------------------------------- 791  Pseudomon...
dbos:SAR116_0395  811 IELY-EEvCHYSNLLEDCKSLVEysdnpd--------------------------------------------------- 838 
Q7Y5R1            827 VAMY-IDgNALQKLLEEHEERWMv-------------------------------------------------------- 849  Salmonell...
WP_010971451      815 VKMY-GDhDVLAEFGREITAMLPeg------------------------------------------------------- 838  Agrobacte...
WP_012172130      791 VQLY-TDcDPLAEFRVDIAGMLSdda------------------------------------------------------ 815  Azorhizob...
Q88KM4            802 IEMY-EEtAVLERFRDELAAQLSdka------------------------------------------------------ 826  Pseudomon...
P00573            833 VDTY-EScDVLADFYDQFADQLHesq------------------------------------------------------ 857  Escherich...
Q6U7U3            960 VLLY-SDnKFLNDYHTRFIQNLEdnqfviketndk--------------------------------------------- 993  Monilioph...
1ARO_P            858 --------------------------------------ldKMPALP-AKGN----LNLRDILESDFAFA 883  Escherichia phage T7
EDK47326         1196 eenmpdlyyvlgkknflyssafpkevnheitdkvpvfvpvKIPDLP-KKGD----LDIEQVLESRYFFS 1259
Q7Y2D9            792 ----------------------------------------GVEATPpRRGS----LNLEAVRDSWAFFC 816  Pseudomonas phage ph...
dbos:SAR116_0395  839 -----------------------------------dpdyiEWPEVP-EKGEgdnaLDVRAILDCDYAFA 871 
Q7Y5R1            850 ---------------------------------------dTGIEVP-EQGE----FDLNEIMDSEYVFA 874  Salmonella virus SP6
WP_010971451      839 ---------------------------------------tQLPPLP-EKGS----LDLSQVLESAFFFA 863  Agrobacterium fabrum
WP_012172130      816 --------------------------------------lgDLPEVP-AKGT----LDVSLVEESDFFFA 841  Azorhizobium caulino...
Q88KM4            827 --------------------------------------raKLAELP-KRGS----LSLAAVAESRFCFA 852  Pseudomonas putida K...
P00573            858 --------------------------------------ldKMPALP-AKGN----LNLRDILESDFAFA 883  Escherichia phage T7
Q6U7U3            994 -----------------------------syvllendkflEIPTIP-KLGK----LDLEKIIKSKYMIS 1028 Moniliophthora perni...
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