1CEZ


Conserved Protein Domain Family
RNA_pol

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pfam00940: RNA_pol 
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DNA-dependent RNA polymerase
This is a family of single chain RNA polymerases.
Statistics
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PSSM-Id: 425956
Aligned: 191 rows
Threshold Bit Score: 294.02
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CEZ_A            450 KPIGKEGYYWLKIHGANCA---G----------VDKVPFPERIKFI--EENHENIMACA----KSPLe----nTWWAEQ- 505  Escherich...
Q7Y2D9            426 RVLGKRGLYWLKVHVANSL---G----------CDKVYFDDRAAWV--DERWDDFQRALaegpENYP------GLFPEA- 483  Pseudomon...
dbos:SAR116_0395  432 KPITKDNLKHLYFQIATTW---GnqvsetderkTDKITLDERYKWV--EDNYEAILLAG----KDYVag---fEHWSKA- 498  Candidatu...
Q7Y5R1            442 PVNGVEALKWFCINGANLW---G----------WDKKTFDVRVSNVldEEFQDMCRDIA----ADPLt----fTQWAKA- 499  Salmonell...
AAK86987          444 PITNEEGADWLAIHGAGLW---G----------VDKCSMNERVEWV--MANQREILASA----ENPYd----nRFWLTA- 499  Agrobacte...
BAF89605          418 pigdgvaAGWLAIHGANVY---G----------YDKASLEDRISWV--EERNALIASVA----ADPWge--gfEFWTEA- 475  Azorhizob...
Q88KM4            423 KPLGEHGAKWLAIHGANVA---G----------YDKASLEDRVKWV--HDHQAEILAIA----ADPFq----aRGWADHv 479  Pseudomon...
Q6U7U3            583 EKVNEEGKFYLYIYGANSHnqnK----------ISKASFKDRIDWV--NKNYDKIINLD----RELI---------LTA- 636  Monilioph...
CCE41131          668 QPLGVNGFYWVKYQLMSVF---G----------NETDCEK----FY--NHNKEQILASA----SDPLh----nHWWMKA- 719  Candida p...
EDK47326          724 KPLGERGFYWLKYQLASLFk-pG----------KETSCEE----FF--EKHKNNILQAA----SNPLddealrRWWLQA- 781  Lodderomy...
1CEZ_A            506 -----DSPFCFLAFCFEYAGVQH-------HGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLL-PSE----TVQ 568  Escherich...
Q7Y2D9            484 -----ESPLCAIAGLLELRAAYAs-----gNPEGYRSGFIVHMDATCSGLQHYSAILRDEIGGAYVNLLpPGL----AKA 549  Pseudomon...
dbos:SAR116_0395  499 -----DAPIQHLAACRELYLADQ-------HGEGYLCGLPIGFDGSNSGLQHYSMLMKWKEDAFKVNLV-PNH----PPQ 561  Candidatu...
Q7Y5R1            500 -----DAPYEFLAWCFEYAQYLDlvdegraD--EFRTHLPVHQDGSCSGIQHYSAMLRDEVGAKAVNLK-PSD----APQ 567  Salmonell...
AAK86987          500 -----EKPWQALAFCFEWQGYVA-------EGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLV-PSD----KPN 562  Agrobacte...
BAF89605          476 -----DKPWQFLAFCFEWAGFLR-------EGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLV-PSG----KPQ 538  Azorhizob...
Q88KM4            480 gaqaiDKPWQFLAFCLEWKGYCE-------HGDRFVSKLPIAMDGSCSGIQHFSAMLRDEVGGAAVNLV-PSD----LPA 547  Pseudomon...
Q6U7U3            637 -----ESPFIFTAFCLNMREIHN--------NPNALIKTPVFLDASCSGIQHLAALMKDLELGANTNLI--EStieeKPG 701  Monilioph...
CCE41131          720 -----DEPFSALSVCIEIQKILQfvqhgkgSIEEYICRLPIHQDGSCNGLQHYAALAADESGGKAVNLV-PMD----TKQ 789  Candida p...
EDK47326          782 -----DKPFQFLATCMEVAKVLKhlg-ngnNVATFICRMPIHQDGSCNGLQHYAGLARDDLGGRSVNLL-PLE----TKM 850  Lodderomy...
1CEZ_A            569 DIYGIVAKK--------------------VNEILQADaingtdneVv-TvtDEntgeise--kvklgtKAlAGQWlaYG- 624  Escherich...
Q7Y2D9            550 DIYSRVLGL--------------------VNESLERDrapgaegeAr----GY------------------ALLWdkAG- 586  Pseudomon...
dbos:SAR116_0395  562 DCYSFIAEAdmnlaqrivdgecdelneneITNAIMDD--------C-------------------------HNWL--KHg 606  Candidatu...
Q7Y5R1            568 DIYGAVAQV--------------------VIKKn----------aLymDadDAttftsgsvtlsgtelRAmASAWdsIG- 616  Salmonell...
AAK86987          563 DIYATVASVliaklrdiaaacpedtttkeVKDKETKEnktivvesD----------------------GSmARKWlaYG- 619  Agrobacte...
BAF89605          539 DIYARVAEValglvtafvcpngsttgtipNLSRLRKTwaehgideLd-----------------------mANRWlaFG- 594  Azorhizob...
Q88KM4            548 DVYGLVAKK--------------------VIERAIHDakhgtedvLkhdadgk--------ayvqegtKNlAQQWtrFG- 598  Pseudomon...
Q6U7U3            702 DIYERLLEP--------------------INKAINKFgeenieysM-------------------------LSLVk---- 732  Monilioph...
CCE41131          790 DVYSTVKDI--------------------VEQKIIADvenrlmgeD----------------------RDhAAFM--LKi 825  Candida p...
EDK47326          851 DVYVEVRDL--------------------VEKKIRNDigtqlaapEe-----------------------vAKAKliLQi 887  Lodderomy...
1CEZ_A            625 VTRSVTKRSVMTLAYGSKEFGFRQQVL---EDTIQPaidsgk---------------------glmftqPNQAAGYMAK- 679  Escherich...
Q7Y2D9            587 LSRSLTKKPCMTLVYGTTFKGVVDHCL---DYLDESgveip------------------------egvpSYRLGSYMAT- 638  Pseudomon...
dbos:SAR116_0395  607 ITRKQTKKNIMTWPYSVTLIGMADQNR---DDMEIItdkaeeeda----------------phpfgedrGSSASMTLAK- 666  Candidatu...
Q7Y5R1            617 ITRSLTKKPVMTLPYGSTRLTCRESVI---DYIVDLeekeaqkavaegrta---nkvhpfeddrqdyltPGAAYNYMTA- 689  Salmonell...
AAK86987          620 ITRKVTKRPVMTLAYGASEFGFREQVF---TDTVTPwkqaagea-------------------fpfegtgFAAASFLGL- 676  Agrobacte...
BAF89605          595 IDRKVTKRAVMTLPYGSTQYSCREFIE---EAVREKveegkpnp-----------------favgdsdgIFKATLWLQP- 653  Azorhizob...
Q88KM4            599 INRKVTKRSVMTLAYGSKEYGFKDQVM---EDILDParkkatdaegn-----------vdarhfpftgdGFRAAGWMAK- 663  Pseudomon...
Q6U7U3            733 LTRKEVKVPIMTKVYNVTKYGISNQLQsifKNIDEEifvdefytkpkneihndfldsfksnksktkficKGKDGKYIRLs 812  Monilioph...
CCE41131          826 LDRKLIKRPVMTTVYGVTLAGASRQIL---ENIEDVvsdydenptkrgl--------ydevtidrlrqfNLRSTMYLAR- 893  Candida p...
EDK47326          888 LDRKLVKRPVMTTVYGVTRYGASEQIY---SRIKEMingieqnpakss---------addvllsrlktfQQRDATYLVE- 954  Lodderomy...
1CEZ_A            680 ----L-IWESVSVT----VVAAVEAMNWLKSAAKLLAA-EVKDKKtge-------------------------ilrKRCA 724  Escherich...
Q7Y2D9            639 ----L-ILDAIRET----VPSAVFAMEWLQRLAKALPD-A-------------------------------------SKD 671  Pseudomon...
dbos:SAR116_0395  667 ----L-NSDSIKAV----VASGARGMEFLRDLAGILASrNVHAE------------------------------------ 701  Candidatu...
Q7Y5R1            690 ----L-IWPSISEV----VKAPIVAMKMIRQLARFAAK-R-------------------------------------NEG 722  Salmonell...
AAK86987          677 ----L-IWDCVGEV----VVAAAGAMDWLQKVAKIAAK-E-------------------------------------SLP 709  Agrobacte...
BAF89605          654 ----L-VWQAIGEV----VKAARVGMDWLKECARLAAA-E-------------------------------------GLP 686  Azorhizob...
Q88KM4            664 ----A-IWEAVNQV----LVKAGEAMKWLQDAATLAAK-E-------------------------------------ELP 696  Pseudomon...
Q6U7U3            813 nkeiYkIASIINDQifvvFPSLNEIYNYFIELAKLAVKl--------------------------------------ELP 854  Monilioph...
CCE41131          894 ----K-ILSSIDEL----FFNAKQMEKWLVENTRRILT-SYNVKTldylqsrtftsasltsslaskalnnwyktpiSYSP 963  Candida p...
EDK47326          955 ----K-IFAAIDDL----FKNAKRIETWLTHTANRINT-SYNVKTldylyrlkrs-----------lkdtyitnpvNLAP 1013 Lodderomy...
1CEZ_A            725 VHWVTPDGFPVWQEYKKPIQ-------T-RLNL---------------MFLGqfrLQPTINTN-KDSeIDAHKQESGIAP 780  Escherich...
Q7Y2D9            672 LHWITPLGMQVFQSYPKTEE-------V-RVRL---------------RAEA---VEYVTLYEaKDE-LDPMRNANGIAP 724  Pseudomon...
dbos:SAR116_0395  702 --WTSILGFPVGQDYRDMKK-------V-TINTeyidrkttrkvryrgTLRA------------KQPtCETKGSKNGIAP 759  Candidatu...
Q7Y5R1            723 LMYTLPTGFILEQKIMATEM-------L-RVRT---------------CLMGd--IKMSLQVE-TDI-VDEAAMMGAAAP 775  Salmonell...
AAK86987          710 VIWNTPAGLKVMQEYTTSEQ-------K-RLEL---------------TFQK---VRLQLSIDvASKkIDKRKQGSGISP 763  Agrobacte...
BAF89605          687 VIWQTPDGFLVQQSYRNSSA-------R-RIDT---------------HLDGr--VRLIIREE-LDT-IDKRRQQQGVAP 739  Azorhizob...
Q88KM4            697 VCWTTAVGFPVMQAYNSVVA-------R-RVKT---------------AINGa-rVRLLMNEE-QDA-LDKRKQSQGISP 750  Pseudomon...
Q6U7U3            855 MTWITPSGLKITQNYFKRKKkvisisiFgKSKK------------------------IVIKEN-TDK-IDKGKQIQSIIP 908  Monilioph...
CCE41131          964 ISWISASGFPVIQTYRKRQQ-------PhSVTG---------------ALGS---IMQSASNK-TAP-MDRRKHELAIAP 1016 Candida p...
EDK47326         1014 ISWISVSGFPVIQVYRDMPK-------V-QTQG---------------VLGS---TSRDASEN-FAP-MDRKKHELAIAP 1065 Lodderomy...
1CEZ_A            781 NFVHSQDGSH---LRKTVVWaHEK----------------YGIeSFALIHDSFGTIPADAANLFKAVRETMVDTYEScDV 841  Escherich...
Q7Y2D9            725 NFVHGLDSSH---LGLTALA-CAA----------------EDI-PIQAIHDSMGTYASDVDRMHVHIREQFIAMYSGpCV 783  Pseudomon...
dbos:SAR116_0395  760 NFVHHMDSTH---LMMSVNK-SNE----------------YGAsNLMCVHDSFSTDIESASVMLDCIKVTLIELYEEvCH 819  Candidatu...
Q7Y5R1            776 NFVHGHDASH---LILTVCElVDK-----------------GVtSIAVIHDSFGTHADNTLTLRVALKGQMVAMYIDgNA 835  Salmonell...
AAK86987          764 NWVHSMDAAH---MQLTVSR-CHD----------------EGIrSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGDhDV 823  Agrobacte...
BAF89605          740 NWVHSMDATA---MRMFINLaLTN-----------------GMqHFALVHDSYGTVAADVELMGACLRKAFVQLYTDcDP 799  Azorhizob...
Q88KM4            751 NFVHSCDAAH---LMLTVVRgVES-----------------GLkSFAMIHDSFGTTAGETELFFMTVRKAFIEMYEEtAV 810  Pseudomon...
Q6U7U3            909 NIIHSLDATHlmnIIQNAIN--------------------DNFnPVITIHDCFGTLPNYMGSLEYRVKKQFVLLYSDnKF 968  Monilioph...
CCE41131         1017 NFIHSLDASH---MFMTCDA-CAEasaeaepgsecgtgpgAGL-IFASIHDSYWTHPNHVEKLSRILRQTFVKLHSF-DY 1090 Candida p...
EDK47326         1066 NFIHSLDASH---MAMTCSA-AAAe--------------nPSL-VFASIHDSYWTHACDVDRLSVILREQFVEMYSF-DY 1125 Lodderomy...
1CEZ_A            842 LADFYDQFADQLHEsq---------------------------------------------------------------- 857  Escherich...
Q7Y2D9            784 LVELAKQL------------------------------------------------------------------------ 791  Pseudomon...
dbos:SAR116_0395  820 YSNLLEDCKSLVEYsdnpd------------------------------------------------------------- 838  Candidatu...
Q7Y5R1            836 LQKLLEEHEERWMVd----------------------------------------------------------------- 850  Salmonell...
AAK86987          824 LAEFGREITAMLPEg----------------------------------------------------------------- 838  Agrobacte...
BAF89605          800 LAEFRVDIAGMLSDda---------------------------------------------------------------- 815  Azorhizob...
Q88KM4            811 LERFRDELAAQLSDka---------------------------------------------------------------- 826  Pseudomon...
Q6U7U3            969 LNDYHTRFIQNLEDnqfviketndk------------------------------------------------------- 993  Monilioph...
CCE41131         1091 MTHVRNDFVKQVQKsycfqlvyfdkmeyrelyaelrairktygdynndnskkvsdllslelrqlhkqkqdhpvsqllkth 1170 Candida p...
EDK47326         1126 MEVVKRDFERQVRNsyqmvyfekkgngelyrkvkefrkqygeskikhqleielreldkvgyh---------------nht 1190 Lodderomy...
1CEZ_A            858 -------------------------------------------ldKMPALP-AKGN----LNLRDILESDFAFA 883  Escherichia pha...
Q7Y2D9            792 ---------------------------------------------GVEATPpRRGS----LNLEAVRDSWAFFC 816  Pseudomonas pha...
dbos:SAR116_0395  839 ----------------------------------------dpdyiEWPEVP-EKGEgdnaLDVRAILDCDYAFA 871  Candidatus Puni...
Q7Y5R1            851 ---------------------------------------------TGIEVP-EQGE----FDLNEIMDSEYVFA 874  Salmonella viru...
AAK86987          839 --------------------------------------------tQLPPLP-EKGS----LDLSQVLESAFFFA 863  Agrobacterium f...
BAF89605          816 -------------------------------------------lgDLPEVP-AKGT----LDVSLVEESDFFFA 841  Azorhizobium ca...
Q88KM4            827 -------------------------------------------raKLAELP-KRGS----LSLAAVAESRFCFA 852  Pseudomonas put...
Q6U7U3            994 ----------------------------------syvllendkflEIPTIP-KLGK----LDLEKIIKSKYMIS 1028 Moniliophthora ...
CCE41131         1171 dpklyhivgnyihkytndidnnadgssvgtlgllrknlvpvfvplRILNLP-KKGT----LDITQVLDSKYFFS 1239 Candida parapsi...
EDK47326         1191 ilmlieenmpdlyyvlgkknflyssafpkevnheitdkvpvfvpvKIPDLP-KKGD----LDIEQVLESRYFFS 1259 Lodderomyces el...
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