Conserved Protein Domain Family
DMRL_synthase

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pfam00885: DMRL_synthase (This model is not part of the current CDD release)
6,7-dimethyl-8-ribityllumazine synthase
This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function. The family contains a number of different subsets including a family of proteins comprising archaeal lumazine and riboflavin synthases, type I lumazine synthases, and the eubacterial type II lumazine synthases. It has been established that lumazine synthase catalyzes the penultimate step in the biosynthesis of riboflavin in plants and microorganisms. The type I lumazine synthases area active in pentameric or icosahedral quaternary assemblies, whereas the type II are decameric. Brucella, a bacterial genus that causes brucellosis, and other Rhizobiales have an atypical riboflavin metabolic pathway. Brucella spp code for both a type-I and a type-II lumazine synthase, and it has been shown that at least one of these two has to be present in order for Brucella to be viable, showing that in the case of Brucella flavin metabolism is implicated in bacterial virulence.
Statistics
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PSSM-Id: 513826
Aligned: 534 rows
Threshold Bit Score: 72.4576
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFQ89267                17 ALRIGIVHARWNTKIIDALLEGTSKKLKE-AG-VKdENIVVQTVPGSYELPYAVKQLYSasqiqssstgvvgaaadllgs 94 
Q00VV4                  93 PVRLGVCVGEFHNKLMDRMLEDARVAAET-MG-AT--IDRVMWVPGTYEAPLVVENMLQdp------------------- 149 Ostre...
XP_003059701           139 PVRVGVVIGEFHNVLMDRMLEDARVAAIA-MG-AT--VDEVVWVPGTYEAPLVVERMLEnd------------------- 195
WP_008082652             3 KINLGIVVSEYNYDITMMMLERAKEHAEF-LG-AD--VKYVLKAPGTFDIPLLVRKLLEkk------------------- 59  Candi...
55_pfamImport            1 AYKIGAVVAEFNYEVTMLMMERAKAEAEF-LG-VE--ITKVIKVPGVFDMPLAIKKLLEcd------------------- 57 
10_pfamImport            1 RAKICIVASEYNEQYTQALVENCSEELKTvLPsV---RLEIIRVPGAFEIPVAIKSVLSr-------------------- 57 
Q83FM6                  23 DIKIAVIAAMWHEKIVRGLIDGATREIVS-SG----SHAELFRVPGSVELVLACKKLLKt-------------------- 77  Troph...
PRJNA63271:OPIT5_21485  15 GFSFGIVAARYNPELVDALVAQVRDQLLA-AG-AAsGDVTVLRVPGSNELPVATQLLLR--------------------- 71 
WP_012374528            15 TLRVGIVAARFNGDLVDALLARAQERLAA-AG-VKpRHLTLVRVPGSHEVPWAVQQLAA--------------------- 71  Opitu...
Q6L153                   1 mIRIGMVVAEFNYDITMMMLERARSYAEF-LG-VE--VHKILRVPGSFDMPLAIKKLLMdn------------------- 57  Picro...
EFQ89267                95 tsdltslsitpsrTSnSpfDAIIAIGVLIKGETMHFEYISEAVSHGLMRLQLDNNVPVIFGLLTLL-SDEQGLVRAGiGG 173
Q00VV4                 150 -----------------tlDACVVLGYIEKGSTLHGQEMGSTFSIIAKQLELEYGKPVGMGIIGPGaTAEQAEERV---- 208 Ostre...
XP_003059701           196 -----------------alDAVCVIGYIEKGSTLHGQEMGATCSLIFKQLELEYNKPVGMGIIGPGaTAEQAEGRV---- 254
WP_008082652            60 -----------------dvDAVVTLGAVIEGETEHDEIVMQNAARKIEDLSVEFGKPVTLGISGPGeSRLQAEARI---- 118 Candi...
55_pfamImport           58 -----------------diDAVITLGAVIKGETKHDEVIMAQAARKITDLALDYDKPVALGVTGPDmTELQAVDRI---- 116
10_pfamImport           58 -------------SPeKrpDAVVALGVILRGSTDHADLIGSTITQALMQLALEFTTPVIHEVLLLN-DEKQAFARC---- 119
Q83FM6                  78 ------------------fDAAVALGVILRGETDHNTHIARLVLSGITDVMLALEKPIGIGVLTID-TEQQGLDRS---- 134 Troph...
PRJNA63271:OPIT5_21485  72 -------------RQ-PalDAVIGLGVIIRGDTLHYQLVAEASQQGLHRVSLDAGVPVIVGVVVAE-NAQQAEDRCR-GP 135
WP_012374528            72 -------------R--GrrDVVIALGVLIGGETSHHEMVGQSVSYALQQVALTTGTPVINGVIVAN-TRAQAEARCR-GR 134 Opitu...
Q6L153                  58 -----------------diDGVVTIGAVIKGETDHHKIIMDNVSRKITDLSLEYNKPVALGISGPGeSRLQAEARI---- 116 Picro...
EFQ89267               174 KngnegHNHGEDWGSAAVEL 193
Q00VV4                 209 -------AYAGNAVRASVRM 221 Ostreococcus tauri
XP_003059701           255 -------AYAGNGMRAAIRM 267
WP_008082652           119 -------EKARDAVEAAIKL 131 Candidatus Aciduliprofundum boonei
55_pfamImport          117 -------EKGRDAIDAVVKM 129
10_pfamImport          120 Ias--qLNRGREAARTAARM 137
Q83FM6                 135 Sg---dYNAGVNAARAVIRM 151 Tropheryma whipplei str. Twist
PRJNA63271:OPIT5_21485 136 ------VNRGAEFARAALEM 149
WP_012374528           135 ------INRGVEFAAAALEI 148 Opitutus terrae
Q6L153                 117 -------DMAKEAVESCVKM 129 Picrophilus oshimae DSM 9789
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