Conserved Protein Domain Family
CTF_NFI

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pfam00859: CTF_NFI (This model is not part of the current CDD release)
CTF/NF-I family transcription modulation region
Statistics
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PSSM-Id: 513804
Aligned: 9 rows
Threshold Bit Score: 311.477
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5VW26       209 EDSFVKSGVFNVSELVRVSRT--------------------PITQGTGVNFPIGEIPsQPYYHDMNS----GVNLQRSLS 264 human
XP_004911089 217 QESFVTSGVFSVTELIQVSRT--------------------PVVSGTGPNFSLGELQ-GHLAYDLNPt---GTGMRRTLP 272
Q4SRP6       319 EDSFIKSGVFSVAELVRVARM--------------------PITLRAAVNFSMADMSsQPYYHDLNS----GVGLHRSLS 374 spotted green p...
XP_011612716 207 QESFVTSGVFSVTELVHVSKT--------------------RVITVVGPGFSMGELH-GHLAYDLNPsvnqPVGLRRSLA 265
XP_040039738 217 HESFERSGVFSVTELVQVSRT--------------------PVVTGVGPSFSMGELQ-GHLAYDLNQ----PVSLRRSLA 271
XP_029707089 233 QDCFVTSGVWNVAELVRVSQT--------------------PVATGTGPNFSLADLDsSPSYYNINQ----VALGRRSLT 288 torafugu
XP_029692670 261 QDCFVTSGVWNVAELVRVSQT--------------------PVAPATGPNFSLADLE-SPGYYNINQ----VTLGRRSIT 315 torafugu
XP_009294515 236 QDSFVTSGVFTVSELVRVSQTgphiksdtvkpqfgtpsssaPIAAGTGPNFSLADLD-SSSYYSMSP-----GAMRRPLP 309 zebrafish
P08651       217 QESFVTSGVFSVTELIQVSRT--------------------PVVTGTGPNFSLGELQ-GHLAYDLNPa---STGLRRTLP 272 human
Q5VW26       265 SPPS---------------SKRP----------KTISIDENMEPSPTGD-FY----PSPSSP-AAGSRTW-HERDQ---- 308 human
XP_004911089 273 STSSs-------------gSKRH----------KSGSMEDDIDTSPGGE-YY----TSPSSP-TGSNRNWaDDVEG---- 319
Q4SRP6       375 SPPG---------------SKRP----------KTVSMDENMDTSPTGPdFY----SSPSSP-ASSRANW-HERDG---- 419 spotted green p...
XP_011612716 266 STSSs-------------gSKRH----------KSGSMEDEVD-SP-GE-YY----HSP-SP-ASSSRNWtEDVEG---- 309
XP_040039738 272 STSCs-------------rSKRH----------KSGSMEEEAD-SPGGE-YY----HSPSSP-ASSSRNWtDDMEG---- 317
XP_029707089 289 SPPStrsevelyanlprssTKR-----------K--SLDDSELESPTDDvFYp--gRSPAAS-SSQSSAWpNDMDA---- 348 torafugu
XP_029692670 316 STPSt-------------rTEMElyaslprssnKRKSIDDSEMESPVDDvFYs--gRSPAAGsSSQSSGWpNDVDAvqhh 380 torafugu
XP_009294515 310 STSSss------------sAKRI----------K--CMEDEVD-SPGEEsYYpgqgRSPGSG--SQASSW-HEVEPagyk 361 zebrafish
P08651       273 STSSs-------------gSKRH----------KSGSMEEDVDTSPGGD-YY----TSPSSP-TSSSRNWtEDMEG---- 319 human
Q5VW26       309 ---------------------DM-SSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHH-HPGIpgVAHSVIStRTPP-PPS 364 human
XP_004911089 320 ---------------------GM-SPTVKKSELDKSPFHSPSPQDTSPRISGFTQHH-RPVI--AVHSGLA-RSPH-TST 372
Q4SRP6       420 ---------------------DM-SSP-TMKKPDKPLFSPTSPQDSSPRLSAFPQPH-HPGLtgVGHSVIStRSPP-PHS 474 spotted green p...
XP_011612716 310 ---------------------GL-SPPVKKTEVD-----SP-PQKDSPRLGSFTQPH-RPVI--AVHSGLS-RSPH-PSP 356
XP_040039738 318 ---------------------GL-SPPLKKAELE-----SPSSQEDSPRLGSFTQHH-RPVI--AVHSGLS-RSPH-PSS 365
XP_029707089 349 ---------------------GL-SSPGSLKKPGKFDF-NALTSQTRPSRMAFTHHP-LPVL-----AGVRpGSPRaSAS 399 torafugu
XP_029692670 381 lasvqerkikhesdgvqfpyhGL-SSPSSLKKPGKFDF-SSLSSQTRSPRMPFTHHP-LPML-----AGVRpGSPRaSAS 452 torafugu
XP_009294515 362 lrgsl--------assfisrqGMpSP-TTLKKSEKSGFSSPVPSQTASPRTAFT-HHhRPVI-----TGPR-ASPHaTPS 425 zebrafish
P08651       320 ---------------------GI-SSPVKKTEMDKSPFNSPSPQD-SPRLSSFTQHH-RPVI--AVHSGIA-RSPH-PSS 371 human
Q5VW26       365 PLPFPTQAILpPAPSSYFSHPTIRYPPHLnPQDTLKNYVP--SyDPSSPQTSQ-----PNGSGQvvGKVPGHF--TPVLA 435 human
XP_004911089 373 TLHFPTSSLLpQAASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-ETSSQQPGP-----LNGSGQ--VKVSSHYisTQMLA 444
Q4SRP6       475 PLQFSASAILpPAPSSYFPHTTIRYPPHLsPADPLKSYVP--SyDPSSPQSSQ-----PNSSGQvvGKVPGHF--TPVLA 545 spotted green p...
XP_011612716 357 SLYFPSAP--------YFPHGAIRYPPHL-AQDPLKDLVSlaS-DPVDKPPSS-----LNGSNH--VKVSSHYisSQLLV 419
XP_040039738 366 SIHFPPTS--------YFPHGAIRYPPHL-AQDALKDLVSlaC-DPANQAPSS-----LNGGNQ--GKVPSHYisSQMLA 428
XP_029707089 400 ALHFPSSSII-QQSSPYFTHPTIRYHHH---QDPLKEFVQfvCtDGPGQPSAQ-----PNGGGQ--SKMPGSF-----LL 463 torafugu
XP_029692670 453 ALHFPSPSII-QQSGPYFTHPTIRYHHHP-GQDPLKEFVQfvCaDGSGPAAGQ-----PNGSGQ--SKMPGSF-----LL 518 torafugu
XP_009294515 426 SLHFPTSPII-QQPGSYFSHHAIRYHP----QETLKEFVQlvCpD-SGQQAGQvgflnPNGSSQ--GKVHNPFlpTPMLP 497 zebrafish
P08651       372 ALHFPTTSILpQTASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-DPASQQPGP-----LNGSGQ--LKMPSHClsAQMLA 443 human
Q5VW26       436 PS-------PhpSAVRPVTLSMtDTKPi-TTSTEGEAASPTATTY--------TASG-TSQANR--YVGLSPRDPSFLHQ 496 human
XP_004911089 445 PP-------P--PGMPRLSLSS-DTKS--TTASDGSTSSPTSPTY--------SAPS-TPPTNRs-FVGLGPREPGSIYQ 502
Q4SRP6       546 PS-------PhhGAVRPVSLSMpDTKPi-TTSTEG---------Y--------SAPG-TPTANR--FVGLSPRDPAFLHQ 597 spotted green p...
XP_011612716 420 PPgptpslaPppPSLHRPTLPA-ESKAttTTSSERGTNSPTSPTC--------STPG-TPPSNCptFIGVTPQDAGELYQ 489
XP_040039738 429 PPgnapslaPapSSLPRATLAA-ESKAt-STSSDG-ANSSTSPTY--------SASG-TPPANRtsFVGVTPQDPGGLNQ 496
XP_029707089 464 PP-------Pp-PVARPVPLPMpDSKIi-STPTDGGLSSPASPSYstpgstapNRFVgIGTRD---------N---FLNI 522 torafugu
XP_029692670 519 PP-------Pp-PVARPVPLPMsDSKPn-STPPDGGLSSPTSLSY--------STPG-ATTPNR--FVGIGSRDNNFLNI 578 torafugu
XP_009294515 498 PP-------PppPMARPVPLPVpDSKPpsT-STDGGGNSPTSPTY--------STPS-TSPAQR--FVSVGPRDPSFvNI 558 zebrafish
P08651       444 PP-------P--PGLPRLALPP-ATKP--ATTSEGGATSPTSPSY--------SPPD-TSPANRs-FVGLGPRDPAGIYQ 501 human
Q5VW26       497 QQ 498 human
XP_004911089 503 AQ 504
Q4SRP6       598 QQ 599 spotted green pufferfish
XP_011612716 490 AQ 491
XP_040039738 497 SQ 498
XP_029707089 523 PQ 524 torafugu
XP_029692670 579 PQ 580 torafugu
XP_009294515 559 PQ 560 zebrafish
P08651       502 AQ 503 human
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