Conserved Protein Domain Family
CTF_NFI

?
pfam00859: CTF_NFI 
CTF/NF-I family transcription modulation region
Statistics
?
PSSM-Id: 425913
Aligned: 11 rows
Threshold Bit Score: 222.481
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q5VW26       209 EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPsQPYYHDMNS----GVNLQRSLSSPPS---SKRP--------- 272 human
XP_004911089 217 QESFVTSGVFSVTELIQVSRTPVVSGTGPNFSLGELQ-GHLAYDLNPt---GTGMRRTLPSTSSs-gSKRH--------- 282 tropical clawed...
XP_018869994 249 QESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPa---STGLRRTLPSTSSs-gSKRH--------- 314 western lowland...
Q4SRP6       319 EDSFIKSGVFSVAELVRVARMPITLRAAVNFSMADMSsQPYYHDLNS----GVGLHRSLSSPPG---SKRP--------- 382 spotted green p...
3_pfamImport   1 QDSFVTPGVFTVAELVRVSQTPIAAGTGPNFSLADLD-SSSYYSMSP-----GAMRRPLPSTSSsssAKRI--------- 65 
XP_016846635 213 QDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLE-SPSYYNINQ----VALGRRSITSPPSsssTKRP--------- 278 green anole
XP_004570393 206 QDCFVTSGVWNVAELVRVSQTPVATATGPNFSLADLD-SPGYYNINQ----VTLGRRSITSTPSt-rTEMElyaslprss 279 zebra mbuna
2_pfamImport   1 QDCFVTSGVWNVAELVRVSQTPVATASGPNFSLADLDsSPSYYNINQ----VALGRRSLTSPPStssTKR---------- 66 
XP_016397727 217 QESFVTSGVFSVTELVQVSRTPVVTGTGPNFSLGELQ-GHLAYDLNPs---GVGMRRTLPSTSSs-gSKRH--------- 282 Sinocyclocheilu...
XP_011612716 207 QESFVTSGVFSVTELVHVSKTRVITVVGPGFSMGELH-GHLAYDLNPsvnqPVGLRRSLASTSSs-gSKRH--------- 275 torafugu
1_pfamImport   1 HESFERSGVFSVTELVQVSRTPVVTGVGPSFSMGELQ-GHLAYDLNQ----PVSLRRSLASTSCs-rSKRH--------- 65 
Q5VW26       273 -KTISIDENMEPSPTGD-FY----PSPSSP-AAGSRTW-HERDQ-------------------------DM-SSPTTMKK 318 human
XP_004911089 283 -KSGSMEDDIDTSPGGE-YY----TSPSSP-TGSNRNWaDDVEG-------------------------GM-SPTVKKSE 329 tropical clawed...
XP_018869994 315 -KSGSMEEDVDTSPGGD-YY----TSPSSP-TSSSRNWtEDMEG-------------------------GI-SSPVKKTE 361 western lowland...
Q4SRP6       383 -KTVSMDENMDTSPTGPdFY----SSPSSP-ASSRANW-HERDG-------------------------DM-SSP-TMKK 428 spotted green p...
3_pfamImport  66 -K--CMEEDVD-SPGEEsYYpsqgRSPGSG--SQASSW-HDVEP-------------------------GMpSPPSTLKT 113
XP_016846635 279 -K--SIDDSEMESPVDDvFYpgtgRSPAAG-SSQSSGWpNDVDA-------------------------G----PASLKK 325 green anole
XP_004570393 280 nKRKSIDDSEMESPVDDvFYs--gRSPAAGsSSQSSGWpNDVDAvqhhlasvqerkikhesdgvqfpyhGL-SSPGSLKK 356 zebra mbuna
2_pfamImport  67 -K--SLDDSELESPTDEvFYp--gRSPAAS-SSQSSAWpNDMDA-------------------------GL-SSPGSLKK 114
XP_016397727 283 -KSGSMEDDIDTSPGGE-YY----TSPNSP-ASSSRNWqEEMEG-------------------------GI-SPTVKKTE 329 Sinocyclocheilu...
XP_011612716 276 -KSGSMEDEVD-SP-GE-YY----HSP-SP-ASSSRNWtEDVEG-------------------------GL-SPPVKKTE 319 torafugu
1_pfamImport  66 -KSGSMEEEAD-SPGGE-YY----HSPSSP-ASSSRNWtDDMEG-------------------------GL-SPPLKKAE 111
Q5VW26       319 PEKPLFSSASPQDS----------SPRLSTFPQHHHPGIpgVAHSVIStRTPP-PPSPLPFPTQAILpPAPSSYFSHPTI 387 human
XP_004911089 330 LDKSPFHSPSPQDT----------SPRISGFTQHHRPVI--AVHSGLA-RSPH-TSTTLHFPTSSLLpQAASTYFPHTAI 395 tropical clawed...
XP_018869994 362 MDKSPFNSPSPQD-----------SPRLSSFTQHHRPVI--AVHSGIA-RSPH-PSSALHFPTTSILpQTASTYFPHTAI 426 western lowland...
Q4SRP6       429 PDKPLFSPTSPQDS----------SPRLSAFPQPHHPGLtgVGHSVIStRSPP-PHSPLQFSASAILpPAPSSYFPHTTI 497 spotted green p...
3_pfamImport 114 SGRSGFCGPAPSPSgtsssssscsSSPRMAFT-HQRPVI-----AGPR-ASPHaPPSSLHFSSSPIL-QQPGSYFSHPAI 185
XP_016846635 326 SGKLDFCSALSSHT----------TSPRMAFTHHPLPVL-----AGVRpGSPRaTASALHFPSTSII-QQSSPYFTHPTI 389 green anole
XP_004570393 357 PGKFDF-SALSSQT----------RSPRMAFTHHPLPML-----AGVRpGSPRaSASALHFPSPSII-QQSSPYFTHPTI 419 zebra mbuna
2_pfamImport 115 PGKFDF-NALTSQT----------RSPRMAFTHHPLPVL-----AGVRpGSPRaSASALHFPSSSII-QQSSPYFTHPTI 177
XP_016397727 330 MD-----SPSPQES----------SPRLG-FTQHHRPVI--AVHSGIS-RGPH-PSSSLHFPGAPILpQTASTYFPHTAI 389 Sinocyclocheilu...
XP_011612716 320 VD-----SP-PQKD----------SPRLGSFTQPHRPVI--AVHSGLS-RSPH-PSPSLYFPSAP--------YFPHGAI 371 torafugu
1_pfamImport 112 LE-----SPSSQED----------SPRLGSFTQHHRPVI--AVHSGLS-RSPH-PSSSIHFPPTS--------YFPHGAI 164
Q5VW26       388 RYPPHLnPQDTLKNYVP--SyDPSSPQTSQ-----PNGSGQvvGKVPGHF--TPVLAPS-------PhpSAVRPVTLSMt 451 human
XP_004911089 396 RYPPHLnPQDPLKDLVSlaC-ETSSQQPGP-----LNGSGQ--VKVSSHYisTQMLAPP-------P--PGMPRLSLSS- 457 tropical clawed...
XP_018869994 427 RYPPHLnPQDPLKDLVSlaC-DPASQQPGP-----LNGSGQ--LKMPSHClsAQMLAPP-------P--PGLPRLALPP- 488 western lowland...
Q4SRP6       498 RYPPHLsPADPLKSYVP--SyDPSSPQSSQ-----PNSSGQvvGKVPGHF--TPVLAPS-------PhhGAVRPVSLSMp 561 spotted green p...
3_pfamImport 186 RYHP----QETLKEFVQlvCpD-SAQQAGQvgflnPNGSSQ--GKVHNPFlpTPMLPPP-------PppPMARPVPLPV- 250
XP_016846635 390 RYHHHH-GQDSLKEFVQfvCsDGSGQGSGQ-----PNGSGQ--GKVTGSF-----LLPP-------Pp-PVARPVPLPMp 448 green anole
XP_004570393 420 RYHHHP-GQDPLKEFVQfvCaDGSGQAAGQ-----PNGSGQ--SKMPGSF-----LLPP-------Pp-PVARPVPLPMp 478 zebra mbuna
2_pfamImport 178 RYHHH---QDPLKEFVQfvCtDGSGQPSAQ-----PNGGGQ--SKMPGSF-----LLPP-------Pp-PVARPVPLPMp 234
XP_016397727 390 RYPPHLsSQDPLKDLVSlaC-DPSNQQPSP-----LNGSGQ--VKVSSHYisSQMLAPP-------Lp-PGLPRLTLPP- 452 Sinocyclocheilu...
XP_011612716 372 RYPPHL-AQDPLKDLVSlaS-DPVDKPPSS-----LNGSNH--VKVSSHYisSQLLVPPgptpslaPppPSLHRPTLPA- 441 torafugu
1_pfamImport 165 RYPPHL-AQDALKDLVSlaC-DPANQAPSS-----LNGGNQ--GKVPSHYisSQMLAPPgnapslaPapSSLPRATLAA- 234
Q5VW26       452 DTKPi-TTSTEGEAASPTATTY--------TASG-TSQANR--YVGLSPRDPSFLHQQQ 498 human
XP_004911089 458 DTKS--TTASDGSTSSPTSPTY--------SAPS-TPPTNRs-FVGLGPREPGSIYQAQ 504 tropical clawed frog
XP_018869994 489 ATKP--ATTSEGGATSPTSPSY--------SPPD-TSPANRs-FVGLGPRDPAGIYQAQ 535 western lowland gorilla
Q4SRP6       562 DTKPi-TTSTEG---------Y--------SAPG-TPTANR--FVGLSPRDPAFLHQQQ 599 spotted green pufferfish
3_pfamImport 251 DAKPpsTSSTEGGGNSPTSPTY--------STPT-TSPAQR--FVSVGPRDPGF-NIPQ 297
XP_016846635 449 DTKSt-STNPEGGAPTPTSPSF--------SAPGsSSSANR--FVGIGPRDGNFLNIPQ 496 green anole
XP_004570393 479 DSKPn-STPPDGGLSSPASPSY--------STPG-ATAPNR--FVGIGSRDNNFLNIPQ 525 zebra mbuna
2_pfamImport 235 DSKIi-STPTDGGLSSPASPFYsilharlhSSPTgLSASE---------HGTTFLNIPQ 283
XP_016397727 453 ESKSs-TTSADAAASSPTSPTY--------SAPG-TPPANRs-FVGIGSRDTGSLYQAQ 500 Sinocyclocheilus rhinocerous
XP_011612716 442 ESKAttTTSSERGTNSPTSPTC--------STPG-TPPSNCptFIGVTPQDAGELYQAQ 491 torafugu
1_pfamImport 235 ESKAt-STSSDG-ANSSTSPTY--------SASG-TPPANRtsFVGVTPQDPGGLNQSQ 282
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap