3DH3


Conserved Protein Domain Family
PseudoU_synth_2

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pfam00849: PseudoU_synth_2 (This model is not part of the current CDD release)
RNA pseudouridylate synthase
Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA.
Statistics
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PSSM-Id: 513795
Aligned: 53 rows
Threshold Bit Score: 68.6013
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DH3_A        69 LIALNKPVGIVSTTEDge----------------------rD------NIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 Escherichia coli
Q4AAT4        90 ILLVDKPQNLQVHGGRf-----------------------nLdlavwnYLKIPENQVFKPSHIGRLDKKTSGIILYGLNY 146 Mycoplasma hyop...
WP_011680884  62 YYLMNKPSGVVSARKD-------------------------KehqtviDLIRPEDQREGLYPVGRLDRDTEGLVLITNNG 116 Streptococcus
WP_011786350  62 YLMLNKPSGYLSATRDdqh--------------------------ptvMELIDPLLRPHVHIAGRLDRASTGLLILTSDG 115 Marinobacter
Q26G32       154 YLLLNKPKGFIAPRKG-------------------------ErasktvLDLMQSAGVANLHYVGRLGRQSVGLMLFTNDL 208 Flavobacteria b...
WP_012023464 130 YILLNKPKNFTTALDE-------------------------GqeyrnvLELVRAATNAKIAPIGRMDKNTTGLLLFTNDT 184 Flavobacterium ...
EAZ95968       4 HFLIHKPYGYLSQFIY-------------------------ElkrpkkLLGELYDFPGNTMAIGRLDEDSEGLLLLTTDG 58 
WP_012056646  66 YYVLHKPKGYVTSLYDpk----------------------------ekNTIKEFFKDKPLKPAGRLDKDVSGVLILTNDG 117 Thermosipho mel...
Q7RHI6       348 TIIVNKPKHYLSISPDnklnnkkllvrnlirnenkyieeehKcmsyfiYKNINIEKVNNLYVCGRLDANSSGLLIYTQDS 427 Plasmodium yoel...
XP_034420041 124 WIVMHKPKGLICTNQDe-----------------------kDrksifsIFPDDLLQKYRIVSVGRLDRNTSGVLLFTNEY 180 Plasmodium berg...
3DH3_A       121 DLVNKILRA-GNDHEKEYLVTVD--KPITEEFI--RGMSAG-------VPILGTVTKKCKVKKEAPFVFR---------- 178 Escherichia coli
Q4AAT4       147 QSVVELNQK-QKFFEKIYTFK----SDINLKNTikTDVFI---------RKNNFQQKMEVTLKSPNSFFAsttfys---- 208 Mycoplasma hyop...
WP_011680884 117 PLGFAMLHP-RYHVAKTYYVEVNdiLGPDAPAFfeSGVVF------------------EDGTVCQSAQLEilssas---- 173 Streptococcus
WP_011786350 116 VWSRRLTEP-AVKIPKVYRVTTAyaISPETEDRfrEGIWF-----------------EYEQLRTSPASLEplge------ 171 Marinobacter
Q26G32       209 EMANKLNNP-NLEMRKIYQVAL--------------------------------------DRSFKHEDLMqlrngiaing 249 Flavobacteria b...
WP_012023464 185 DMIRKFSLP-NQKSPKIYQVSL--------------------------------------DKNLKFEDLEkiskglvldg 225 Flavobacterium ...
EAZ95968      59 MMSEIV--R-SKKVEKEYYAQVDglITEEAIEKlkNRVEI------------GFNGKKYLTKKCNAFILEtipnlgergk 123
WP_012056646 118 DLIDVLTNA-KYGVKKVYIAKI--------------------------------------TGRVKFEDLLslkkgiydkg 158 Thermosipho mel...
Q7RHI6       428 IASSYLLNkyKYQVEKEYIITTF--NEINECHLkmLKDNLFvdgkliyKCHIQYVDSFTLIFKLYQGFHKiirk------ 499 Plasmodium yoel...
XP_034420041 181 TWVNKLTHP-KYERVRKYMIHI--------------------------------------EGPVRMDALKmlangvylkd 221 Plasmodium berg...
3DH3_A       179 -------------------------------------ITLVQGLNRQIR---RMCEH 195 Escherichia coli
Q4AAT4       209 -------------------------------knqkkfAILHTGKKHQIR---VSLSH 231 Mycoplasma hyopneumoniae J
WP_011680884 174 -------------------------------dkscarITISEGKFHQVK---KMFLA 196 Streptococcus
WP_011786350 172 ---------------------------------revrLTIYEGRYHQVK---RMFHA 192 Marinobacter
Q26G32       250 evidv-----------------keinyvedgrnneigIEIHSGKDNIVQ---ALFEA 286 Flavobacteria bacterium BBFL7
WP_012023464 226 hrvsv-----------------eeisyiekepksevgL--------------KLRSS 251 Flavobacterium johnsoniae
EAZ95968     124 ki-----------------------rderhgptswvsITLTEGKFRQVR---KMTSA 154
WP_012056646 159 dflkle----------------hfdileqgfnystvkVEMIKGKKHEVK---RLFEK 196 Thermosipho melanesiensis
Q7RHI6       500 ---------------------------------icllSNIKIRSLHRIRigkIHLNN 523 Plasmodium yoelii yoelii
XP_034420041 222 ednnkkkkkktqpafievlreenvkiqnqikkitvlnISIKEGRNRQIR---KMFQQ 275 Plasmodium berghei ANKA
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