7TUV,8QCF,7AM1


Conserved Protein Domain Family
RNB

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pfam00773: RNB (This model is not part of the current CDD release)
RNB domain
This domain is the catalytic domain of ribonuclease II.
Statistics
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PSSM-Id: 513737
Aligned: 56 rows
Threshold Bit Score: 175.943
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7TUV_A  262 RLDLRD---LCVVSVDPLGCRDI-----DDALHCR-----RVng-----------nhLEVGVHIADVTHFLKEGTAMDEE 317  Trypanosoma brucei
O74454  614 QHE---------SNINSSSATDFv----SSAFHIR-----PTst------------gYHVGIHVTDVSRVIEPGSPLDRE 663  Schizosaccharomyces...
P24276  692 FTDTNE---YNIFAISELGWVS------EFALHVRnng----------------ngtLELGCHVVDVTSHIEEGSSVDRR 746  Saccharomyces cerev...
Q54JL2  637 RVLIKK---LSFSFIDNNYNNNC-----DANFYGEeririSSpepsigildkndgsnFVVFVNIPDFTDSVEKYSNLDSI 708  Dictyostelium disco...
Q7V7I0  239 RQDLSS---QPALLLRSWQVSDAp---pLPAVYVE------Pha-----------ggTRLWIHAPAVAERLTIGNNLDLW 295  Prochlorococcus mar...
Q2JH83  252 RRDLRD---WFCITLEPLDLQHPhglepNVAVSLQ-----RQen-----------dhWLLGIHIADVAHWLDPDHPLEQE 312  Synechococcus sp. J...
Q8DHS2  247 RQDLRE---LVTITLVAPGQEP------QVAFSLD-----GLgp-----------dlWQLGIHISDVGGLLPRDELLDRT 301  Synechococcus elong...
Q46363  245 RTWITA---KLQLVTFGDGPRGEtlpwqEVALSLEsqa-----------------nqWQVGIHITDIAHYIAEDSLLDQL 304  Synechocystis sp. P...
Q8YXH3  245 klDLRN---LFTFTITGINSDTKv---iENAISLE-----KTia-----------gnWQLGFHIADVSHYVQPDEPLDRE 302  Nostoc sp. PCC 7120
7AM1_A  355 RRNFTDtneYNIFAISELGWVS------EFALHVR-----NNgn-----------gtLELGCHVVDVTSHIEEGSSVDRR 412  Saccharomyces cerev...
7TUV_A  318 AAKRSTSVYLVDRRINMLP-------------------------QLLTENLCSIVAD-------ED------RYAFSIMW 359  Trypanosoma brucei
O74454  664 LQRRSIAVNLCQKSVPLFP-------------------------TTLGEAL-SLRED-------KD------CYTMSLLL 704  Schizosaccharomyces...
P24276  747 ARKRSSAVFMPQKLVNLLP-------------------------QSFNDEL-SLAPG-------KE------SATLSVVY 787  Saccharomyces cerev...
Q54JL2  709 SMLRSQSIDLPNKSYKMLPigtlkdlklyedkkigfnknkyrseDSLNYDTATANPYyskvgfdESynrkngNRCLSLII 788  Dictyostelium disco...
Q7V7I0  296 LRDRAEALCLGEVWHPLLG-------------------------QILSKA-CSFKVG-------EI------NDAVSVAL 336  Prochlorococcus mar...
Q2JH83  313 AQQRTATVYLDTMVLPLFP-------------------------PEVHNRL-ALLPQ-------QE------RLAYSLLV 353  Synechococcus sp. J...
Q8DHS2  302 ARRQGMSLATPELSLPLLP-------------------------QELET--LRLLPG-------GD------RAAISLLI 341  Synechococcus elong...
Q46363  305 ARKRGTTVYLEEQICPLFP-------------------------EGLIGR-CSLIPD-------ED------RLALSFFL 345  Synechocystis sp. P...
Q8YXH3  303 AIKRGRSVYLGDLVLSMLP-------------------------DTVADRA-SFVTG-------SD------RLALSFLI 343  Nostoc sp. PCC 7120
7AM1_A  413 ARKRSSAVFMPQKLVNLLP-------------------------QSFNDEL-SLAPG-------KE------SATLSVVY 453  Saccharomyces cerev...
7TUV_A  360 EFD-EN-YSVVREFFGKTVIRSRAALYYGDAQRMIDdPEDESEA----------AVSLRY----LMQLSRHF----R--- 416  Trypanosoma brucei
O74454  705 DVS-ST-GKIRGTWIGWAVIRPRKAYTMKEADELLQt-----------------DARLRL----FHTVSSRL----Rthh 757  Schizosaccharomyces...
P24276  788 TLD-SStLRIKSTWVGESTISPSNILSLEQLDEKLStGSp--------------TSYLST----VQEIARSF----Y--- 841  Saccharomyces cerev...
Q54JL2  789 TFD-GKnDKVLSFEILPSNVHKIKINTFSKFQKMINqEFVEKDKs---------IYDLLK----LYRIAKVL----K--- 847  Dictyostelium disco...
Q7V7I0  337 DIS-AD-GEVTNWHFSLSSIKPVAEIGPKTLTALSNrKPKARTVpaalkpvkdhLAQLET----LIFCARTL-------- 402  Prochlorococcus mar...
Q2JH83  354 TLD-PE-GVVQNFEIYPSLVQSRAHLSYGQVQALLAtTADLGPDeev----pelMALLQN----LLRLSQIL----R--- 416  Synechococcus sp. J...
Q8DHS2  342 VLN-TA-GEVQSYRIYRSCIRVDACVTSEQVAATLAlGDSs-------------GDWLRA----LIHLANAV-------- 394  Synechococcus elong...
Q46363  346 TVD-DR-GEVTGFEYHSSVVKVDHQLDFSEVQTALAdIESv-------------SGELKPygglLQELFFQIcpliK--- 407  Synechocystis sp. P...
Q8YXH3  344 TIS-SQlGEVLEWEIQPSVINVDNNVSKQQAEAILQgAATKKDSpq-------iIERLQN----LTTIGQAI----K--- 404  Nostoc sp. PCC 7120
7AM1_A  454 TLDsST-LRIKSTWVGESTISPSNILSLEQLDEKLStGs--------------pTSYLST----VQEIARSF----Y--- 507  Saccharomyces cerev...
7TUV_A  417 -------------KRREKD-GALFL-CSQEFKFKV----Dndhv-----nptdMQA-----------------YQTFDSN 455  Trypanosoma brucei
O74454  758 lgtdvplsrycrlVRRWDE-ESCSFdPNETNLFIS-----------------------------------------SAVE 795  Schizosaccharomyces...
P24276  842 -------------ARRINDpEATLL-PTLSLLESLddek----------vkvdLNI-----------------LDRTLGF 880  Saccharomyces cerev...
Q54JL2  848 -------------KRRTAM-KNADQnQIKQNNLDSkflfNksktvkeknriklDHI-----------------NPNSQAR 896  Dictyostelium disco...
Q7V7I0  403 -------------QMGEQAsGSIELdlav--------------------pelqCLGdlrwadpdsyhhqwalpLDQTDPQ 449  Prochlorococcus mar...
Q2JH83  417 -------------AKRHQA-GGFDL---PLLDLLTphsaDesg-------ygpLLI-----------------SDRLGAH 455  Synechococcus sp. J...
Q8DHS2  395 -------------SQRRQArGSIEV--TPAEALRLayadE------------------------------------GLAP 423  Synechococcus elong...
Q46363  408 -------------SQRLQR-GSFNL-QTETASPRL----Degr-------lgvIMT-----------------QETLPIR 444  Synechocystis sp. P...
Q8YXH3  405 -------------ESRLAR-GSLQLnLPSNQNPYY----Degs-------lgaVLVn----------------D--SPVR 441  Nostoc sp. PCC 7120
7AM1_A  508 -------------ARRIND-PEATLlPTLSLLESL----Ddekv------kvdLNI-----------------LDRTLGF 546  Saccharomyces cerev...
7TUV_A  456 SMI-------EEWMLFANAAAARRV-Y-AsFPRWTLLRRHQAPAENAFDTLNEAIrrki-----------gvkL--DDTT 513  Trypanosoma brucei
O74454  796 VLR-------ETLLDAANRAVASHLrQ-E-FRENAFLRTQRLPSRENCRILQSMA------------------I--QMGC 846  Schizosaccharomyces...
P24276  881 VVI-------NEIKRKVNSTVAEKIyT-K-LGDLALLRRQMQPIATKMASFRKKI------------------Q--NFGY 931  Saccharomyces cerev...
Q54JL2  897 IIY-------DEFKYLTNHLVAKYS-L-A-LNINTIPLIIPKEAKENYANFIINNqn----------------------- 943  Dictyostelium disco...
Q7V7I0  450 SVL-------SPMIRAAHRAWAQHA-Q-N-LQLPGLVIEASEADNNTLNDVAKSAl----------------aL--DIAL 501  Prochlorococcus mar...
Q2JH83  456 ALM-------TEILLLANQILGHHL-R-Q-LGIPSLARVQPAPAAEALQSFLRLAnamkldlnlqdpavvtlaD--WQRI 523  Synechococcus sp. J...
Q8DHS2  424 AIFlpkvtpwTSLVILANELLGRHL-A-K-LGVPALYRTQPVPELYGVQDFLKLCqnlnlplsldhpsqvtprD--YQRF 498  Synechococcus elong...
Q46363  445 SLL-------AELMVVLQREVALQL-Q-A-LGIPGLYCGQVAPEGEDLTDIVKLAgnldlgvkidlegdiipqH--YHHL 512  Synechocystis sp. P...
Q8YXH3  442 SLL-------MELVLLVNELIATHL-S-A-LGIPAIWRTQGTPDSEDVQEMLKLAinlgvelalepevdieplD--YQQL 509  Nostoc sp. PCC 7120
7AM1_A  547 VVI-------NEIKRKVNSTVAEKI-YtK-LGDLALLRRQMQPIATKMASFRKKIqn--------------fgYnfDTNT 603  Saccharomyces cerev...
7TUV_A  514 sl------alNESLEKCV-D----PsdpyFNRLIRTLVTR------CLRQAQYfsssevS------KDEFH------HFG 564  Trypanosoma brucei
O74454  847 vldlsstkslLRSLSLIE-D----Dt---VRNILQLYYYK------VTPRAVY------E------MQKYKgnlasqMMS 900  Schizosaccharomyces...
P24276  932 nfdtntadelIKGVLKIK-D----Dd---VRVGIEILLFK------TMPRARYfiagkvD------PDQYG------HYA 985  Saccharomyces cerev...
Q54JL2  944 ---------qLESLENNN-Nn--nN----NNNNDNNNIFNrpfityPINETGY------------------------NI- 982  Dictyostelium disco...
Q7V7I0  502 eldeegrpaaTELAKAFS-T----Ta---CRRVLDQQLRH------ALPETLL--------------------------R 541  Prochlorococcus mar...
Q2JH83  524 ----------CARITAPD-VlasgA----SPALVAQMLA-------TLPPVEYrl--qpL------EEQLG------HFG 567  Synechococcus sp. J...
Q8DHS2  499 ----------MAQLATSD-L----------AALLQELLLD------KLKPASD------S------PVVLT------HFG 533  Synechococcus elong...
Q46363  513 ----------SQGFESLP-A----------KAVLNHLLAN------TLKIEKY------F------SHPAP------HFA 547  Synechocystis sp. P...
Q8YXH3  510 ----------TRAFAESP-S----------EQVLTYLLQD------TLKPAVY------S------TTKAS------HFG 544  Nostoc sp. PCC 7120
7AM1_A  604 ad------elIKGVLKIKdD----D----VRVGIEILLFK------TMPRARY------FiagkvdPDQYG------HYA 651  Saccharomyces cerev...
7TUV_A  565 LAMPI----------------------YTHFTSPIRRYADVIVHRQLAAAL 593  Trypanosoma brucei
O74454  901 LGIEDes------------------ddLTHFTAPLERYGDIVVHYQLQLLL 933  Schizosaccharomyces pombe 972h-
P24276  986 LNLPI----------------------YTHFTAPMRRYADHVVHRQLKAVI 1014 Saccharomyces cerevisiae S288C
Q54JL2  983 ---------------------------YTNAFSPLSNYLDLYVARELKEYK 1006 Dictyostelium discoideum AX4
Q7V7I0  542 LGINDsqkengniesdhedtktkdsnlQSPWCCPTIHYTDLVNQEIIVTLL 592  Prochlorococcus marinus str. MIT 9313
Q2JH83  568 LGLKEp---------------------YATFTAPLRRYADLLNLRALHLAL 597  Synechococcus sp. JA-2-3B'a(2-13)
Q8DHS2  534 LATAEg---------------------YGHFCSPLQRYTDIVNQRILHLLL 563  Synechococcus elongatus
Q46363  548 LAYDSg---------------------YTHCVSPAQRYGDLVIQRLLKLVL 577  Synechocystis sp. PCC 6803 substr. Kazusa
Q8YXH3  545 LALLQ----------------------YTHFTAPLRRYPDLLMQRVYYQLL 573  Nostoc sp. PCC 7120
7AM1_A  652 LNLPI----------------------YTHFTAPMRRYADHVVHRQLKAVI 680  Saccharomyces cerevisiae S288C
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