2KGF,6SSJ,2V4X,3VRL


Conserved Protein Domain Family
Gag_p24

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pfam00607: Gag_p24 
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gag gene protein p24 (core nucleocapsid protein)
p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.
Statistics
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PSSM-Id: 425774
Aligned: 68 rows
Threshold Bit Score: 62.3086
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2KGF_A        15 HHNGFDFAVIKELKTAASQYGATAPYTLAIVESVAd-NWLTPTDWNTLVRAVLSG-GDHLL----WKSEFFEN-CRDTAK 87  Mason-Pfizer mo...
GCF51201     178 THAPFKFQLMKELKTAVSTYGLSSPYAQGLMDNVFs-LHLIPEDLKLLARTLLPP-SALVI----FNNEWAPAlVQQYNA 251 Paroedura picta
RMC20684      98 EYLPFSYQDKKELCKMQKQFGRSSEIFKGMMKATFnsNEMVPSDIKDLFRCLLTP-SEYDL----WEGLWKKA-LKTVLQ 171 Hirundo rustica...
RMB97346     201 KWERLDREVVRDLMKAVRDNGLGSPYFKQLLKGTFniYDLTPFDIRSLATMILSD-SQFIL----WEAKWRKI-LNDYRI 274 Hirundo rustica...
RMC04376     152 TWTAIPSQDIKELRKAIKDSGICSPYFKQLLKSTLegHTLTPNDCKTLAGIILTD-SQYML----WEFKWRRL-LTNVLQ 225 Hirundo rustica...
RMC11177      27 TYSLVNPKDVQAIVKAITDRGINSAMVSTLIDSVFggDDMLPFDIKQTCRLIFDG-AGMIV----FKQEWEDN-CAKQLA 100 Hirundo rustica...
P04592       143 VHQAISPRTLNAWVKVIEEKAF-SPEVIPMFSALS--EGATPQDLNTMLNTVGGHqAAMQM----LKETINEE-AAEWDR 214 Human immunodef...
CAP72503     128 QWEPLSPRTIQTWVKHIEDRGFG-AECVPFFSALT--DRALTHDINTLLNNIGDHqAAMQI----VKEIVNEE-ITEWDR 199 SIV-wrc Pbt-05G...
XP_015146692 222 IWVPLDPKGVARMIEAVEKKGLKSPLTMNALETLIapGPMLPYDIENLMRMVLKP-VQYML----WKEEWHTR-IKQMLI 295 chicken
GCF64428      77 THTPFEFQLMKELKTVVSTYGLSSPYAQGLLDNVFs-LRLIPEDLKLLACTLLPP-SALVIfdneWEHEYRER-VPVLVQ 153 Paroedura picta
2KGF_A        88 RNq-QAGn------Gw--DFDMLTGSGN-YS-STDAQ-MQYD--PGLFAQIQ-AAAT-KAWRKLPVKG 139 Mason-Pfizer monkey virus
GCF51201     252 QL--PPGsarv---deaiMLDGLLGRST-QA-AITTQ-VALH--RPIQEAFV-AAAR-AAFICTPDPT 307 Paroedura picta
RMC20684     172 EI--QQTpdaqdsdDndiTHDHLCGEGD-LS-SANEQiRLLS--KSVLDKIC-NAAE-KTFYQIPSPE 231 Hirundo rustica rustica
RMB97346     275 KY--QGGana------gfTVAQMAGDPP-LD-SAVRQaSFLP--RDVLTDIK-DAAR-KAMVQIPPAG 328 Hirundo rustica rustica
RMC04376     226 MY--RQCpdv--dlRt-lTMSKLTGDPP-DD-QNDNQ-VNLP--RIALDDIK-KMAR-EAFVPIQPAG 281 Hirundo rustica rustica
RMC11177     101 LV---TGadhp---lhgsSLQRLMGTDP-TTiTPQAQaKGLR--AHEVMTTT-RAAR-EAIRSASMVI 157 Hirundo rustica rustica
P04592       215 LHpvHAGpiapgqmReprGSD-IAGTTS----TLQEQ-IAWM---TSNPPIPvGEIY-KRWIIVGLNK 272 Human immunodeficiency viru...
CAP72503     200 THppPVGplppgamRnptGSD-IAGVTS----TMEEE-LAWL---AQQPPIDiGAIY-KRWIIRGLQK 257 SIV-wrc Pbt-05GM-X02
XP_015146692 296 TA---QGdqg--npIhgsNIQRLMGSAPgLL-TPQAQvGQLR--PGELIATT-DAAI-DAFRKLARSA 353 chicken
GCF64428     154 QYnaQLPpgsarvdEa-iMLDGLLGRSI-QA-AITTQvALHSpiQEAFLRTPdPTGKlQIWGAVRQGP 218 Paroedura picta
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