6HWI,2V4X


Conserved Protein Domain Family
Gag_p24

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pfam00607: Gag_p24 (This model is not part of the current CDD release)
gag protein p24 N-terminal domain
p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.
Statistics
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PSSM-Id: 513594
Aligned: 53 rows
Threshold Bit Score: 47.6505
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6HWI_C           1 GFDFAVIKELKTAASQYGATAPYTLAIVESVAD-NWLTPTDWNTLVR-AVLSG-GDHLLWKSEFFENCRDTAKRNq-Q-A 75   Mason-Pfizer...
10_pfamImport    4 AFQWDLIKELRKAVSTHGLRAPFTQSLLEYVMAgQLLVPYDCRQIAA-LILTP-KHKLLWEQTWEAGCRLAALGNm-Q-R 79  
RMC11177        30 LVNPKDVQAIVKAITDRGINSAMVSTLIDSVFGgDDMLPFDIKQTCR-LIFDG-AGMIVFKQEWEDNCAKQLALV----T 103 
P04592         146 AISPRTLNAWVKVIEEKAF-SPEVIPMFSALS--EGATPQDLNTMLN-TVGGHqAAMQMLKETINEEAAEWDRLHpvH-A 220  Human immuno...
RMB96119       139 PLAWQALTELRDVVRKYGLGSAEVMQVLR-SFNaSLLTPFDIRSLAR-ALFPP-VEYDFFENKWTQLAVRAVERNt-T-L 213 
OWK53814       185 PFSFKVLKEIRDTVAQHGLGSDEVMHMIR-LLVtDLLTPSDIRSVAQ-ALFNP-VQFDVFEDKWVSLVASAVRKNa-T-R 259 
2_pfamImport     4 PFDWKTVSQLQKTVMEYGHDHKQVRTLVQAFFKnQTLVPADIRALME-IXLPP-PVYMIFKDKWAERCEVAMINNl-NkA 80  
OPJ69278       280 PFDWKKVKQLQSAVMQYSMDNKHVMQLINSFFKgQVLTPTDIRALME-LLLPP-TGYLLFLDKWQRKVELAVLENv-H-L 355 
P03353         150 PWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQqFDPTAKDLQDLLQyLCSSL------VVSLHHQQLNTLITEAe-T-R 221  Human T-lymp...
EGV94779       428 PIQLKDLKHIKESVVSYGLHSPYVKQLLHSWATfNRVTPADWIGLVS-AVLEK-SCQIEWKALLREE-GKLVERQaiR-D 503 
6HWI_C          76 G---NG--------WDFDMLTGSGNYS-STDAQ-MQYD--PGLFAQIQ-AAATKAWRKLPVKG 122  Mason-Pfizer monkey virus
10_pfamImport   80 Q---PGdpl---rgAGVPQLMGTGPFL-DPRLQ-ARLN--AAILRQAA-SLALQAMLKLPGAG 131 
RMC11177       104 GadhPLh------gSSLQRLMGTDPTTiTPQAQaKGLR--AHEVMTTT-RAAREAIRSASMVI 157 
P04592         221 G---PIapgqmrepRGSD-IAGTTS---TLQEQ-IAWM---TSNPPIPvGEIYKRWIIVGLNK 272  Human immunodeficiency virus ...
RMB96119       214 G---PGdpr---rmVNIDMLMGTGNYT-RAEGQ-AGYE--PLVQEQCQ-QTGMAALVQTLQLA 265 
OWK53814       260 G---QQdpr---rvVNADMLMGTGNYV-DPRGQ-AGYD--PLVLDQCR-TLGLAAMIQALEMA 311 
2_pfamImport    81 P---QDdpl---rfVTRDQLLGEGQYQ-DGAAQ-AAMH--PRIIQQSQ-ALALAAFNELPSFG 132 
OPJ69278       356 P---ADdpl---qlASMDQLLGRRQYA-DGAAQ-AALH--PRILQQTQ-VLALAAVKELSNIG 407 
P03353         222 G------------------MTGYNPMAgPLRMQ-ANNPaqQGLRREYQ-NLWLAAFSTLPGNT 264  Human T-lymphotropic virus 2
EGV94779       504 G---VD--------APLQKILGEGIYA-DPQVQ-AEYD--DHMLSLCG-KAALNAWDKVREPG 550 
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