1L6N


Conserved Protein Domain Family
Gag_p17
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pfam00540: Gag_p17 (This model is not part of the current CDD release)
gag gene protein p17 (matrix protein)
The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.
Links
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Statistics
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PSSM-Id: 513536
Aligned: 4 rows
Threshold Bit Score: 220.581
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1L6N_A   2 GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81  Human immunodeficienc...
P03349   2 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81  HIV-1 M:B_ARV2/SF2
P27972   2 GAATSALNRRQLDEFEHIRLRPNGKKKYQIKHLIWAGKKMDRFGLHEKLLETEEGCKKIIEVLSPLEPTGSEGMKSLYNL 81  Simian immunodeficien...
P17282   2 GARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCTKLLQQLEPALKTGSEGLRSLFNT 81  SIVcpz GAB1

1L6N_A  82 IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKK--------AQQAA--AdTGNNSQVSQNY 132 Human immunodeficiency virus 1
P03349  82 VATLYCVHQRIDVKDTKEALEKIEEEQNKSKKK--------AQQAAaaAgTGNSSQVSQNY 134 HIV-1 M:B_ARV2/SF2
P27972  82 VCVLLCVHQEKKVKDTEEALAIVRQCCHLVDKektavtppgGQQKNntGgTATPGG-SQNF 141 Simian immunodeficiency virus (AGM155 IS...
P17282  82 LAVLWCIHSDITVEDTQKALEQLKRHHGEQQSKtesn-sgsREGGAsqG-ASASAGISGNY 140 SIVcpz GAB1
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