5DKT,1SL1,2KFN


Conserved Protein Domain Family
DNA_pol_A

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pfam00476: DNA_pol_A (484383 is an unknown moldel)
DNA polymerase family A
Statistics
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PSSM-Id: 484383
Aligned: 552 rows
Threshold Bit Score: 135.275
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DKT_A            281 LENLQKSTNEILNELNIEKD-NLKKKlK-DeN------INVN---SQQQVLKALQ------KNNvrdisnKlIe------ 337  Plasmodiu...
REF_PBI:SPO1_146  470 MIGNIKSANRTPEQQDKFKKyKKYDP-SkGgDk-----INFG---STKQLGELLFermgleTVIftdk------------ 528 
WP_025434860      234 KATMLKKQAKAEEQLSRMKT-EIDAI-T-G-G------IHIGanaSTSAFKQYLYkd--lgLPVlktte----------k 291  Peptoclos...
WP_014256699      233 KSAMLKKQAEAAEKIVSIRK-EITGI-I-G-N------VEIGanaSTSAFKKYLFvd--lgLPVmktta----------k 290  Acetivibr...
WP_012963026      212 IKELEDLIREYKKNLNKKVM-EFMMHyR----------IDPL---SPKQLGELLSkrlgldLPKtekgniS--------- 268  Hydrogeno...
Q4UGW4           1418 EDKLRILQDELKQEHQEISN-DLYSQlN-HsE------INLN---SQKQVLEKLqe-------------lKiMdrskkki 1473 Theileria...
WP_014142401      243 SDYAEARLAELAAEYERWEQ-VANRYgV----------ENIN---STAQLVDAFLgfgirltk-------------ktak 295  Streptomy...
Q05254            240 VEYSRSLAEKWLADQEVWEAiAFTEYgV----------EKVN---STEDLAEGLEemgvkitg-------------rtet 293  Fromanvir...
1SL1_A            292 fkkpknkaqregREPCELDT-REYVAgA-PyTpvehvvFNPS---SRDHIQkk--------lqEagwvptKytdk----- 353  Escherich...
XP_653960         271 NKLLNEQRKKLIEEQHKIEM-ETKKI-I-GrT------INLS---SPEQVKKELIrfn---------igiDgIkkk---- 325 
5DKT_A            338 ---nTSDSNLKNF---L-NH----EeiIS-----LRNYRRLYKL--------YS--AFYLKLPLHINTK-TN-KIHTTFN 389  Plasmodiu...
REF_PBI:SPO1_146  529 gapsTNDDSLKFMg-sQ-S-----D--FVk---vLMEFRKANHL--------YN--NFVSKLSLMIDP--DN-IVHPSYN 583 
WP_025434860      292 yqeaADDQALIMLr-dW-CQenkpE--LVrlfdlIQEYRKWGKL--------KS--TYIDGYLQHINTA-TG-RIHPDLM 355  Peptoclos...
WP_014256699      291 hqeaADDETMILLk-gW-CEsnrpE--LArlfelVQEYRKWGKL--------KS--TYIDGYLRFIDED-TG-RIHPDLM 354  Acetivibr...
WP_012963026      269 ----TDDKILSQFi----------HhkPVq---mILEIRMTKKL--------------LDKLDEIRSFVkDG-SVYPEFK 316  Hydrogeno...
Q4UGW4           1474 isdtSESTLIRNMs----N-----P--IIs---sLREYRKANKA--------LT--AFTQKLPNHINPI-TK-RIYPNYN 1527 Theileria...
WP_014142401      296 gnlaMDDDVLNGId-----H----P--LAe---aVIKARRARKWsatwf------------qraldGRDsRG-RVHASIN 348  Streptomy...
Q05254            294 gkrqVNAALLDKLvedGnE--------LAa---iAQEAKKLGKWrktwv------------qkfidTRDsED-RCHTFIN 349  Fromanvir...
1SL1_A            354 gapvVDDEVLEGVr-vD-D-----PekQAai-dlIKEYLMIQKRigqsaegdKAwlRY--------VAE-DG-KIHGSVN 415  Escherich...
XP_653960         326 --atTDKKILSQSd-----H----P--FAk---lVLEYRKISKL--------LS--GVIEQIRKCCIKSgDEyFIRTTWS 379 
5DKT_A            390 ------QLKTFSGRFSSEKPNLQQIP--RQ----------KNI----REIFIPNDn------NiFIIA--DFKQIELKIA 439  Plasmodiu...
REF_PBI:SPO1_146  584 ------IHGTVTGRLSSNEPNAQQFP--RKvntptlfqynFEI----KKMFNSrfgd----ggvIVQF--DYSQLELRIL 645 
WP_025434860      356 ------PLGTETGRFAARNPNLQNCPr-KDnd-------pVGV----RSFIVAPEg------KvILSL--DFSQIELRVG 409  Peptoclos...
WP_014256699      355 ------PLGTETGRFASRNPNMQNCPq-KDnd-------pIGV----RKFIISPAg------KvLLSL--DFSQIELRVG 408  Acetivibr...
WP_012963026      317 ------QIGAITGRMSSLNPNVQNIP--RD------------L----RGVFKAREg------KvLVIS--DFSQIELRIA 364  Hydrogeno...
Q4UGW4           1528 ------QLGAESGRFSCDGPNLQQVP--RD----------KKF----RECFVAPKg------SkFVIA--DFSQIELRIA 1577 Theileria...
WP_014142401      349 siqartARMSITGSVPA-----QTFPagd---------------gyvRHMFLAEEgh------vSVSI--DFGNMELRDL 400  Streptomy...
Q05254            350 plqartSRMSITG-IPA-----QTLPssd---------------wivRRCFIAEPgd------vMASV--DYQAQELRVL 400  Fromanvir...
1SL1_A            416 ------PNGAVTGRATHAFPNLAQIPgvRSpy-------gEQC----RAAFGAehhldgitgKpWVQAgiDASGLELRCL 478  Escherich...
XP_653960         380 ------QTAIVTGRIQSKSPNLQQIPk-QSfs-------lPQCliipRDLFITHNnn------tFVAI--DYNQIELRIL 437 
5DKT_A            440 AEITNDEIMLKAYNNNI--------DLHTLTASIITKKNI-PDIN------KED--RHIAKAINFGLIYGMNYVNLKNYA 502  Plasmodiu...
REF_PBI:SPO1_146  646 AVITQDPTLIDLYRSGA--------DLHKAVASDAFGVAI-EEVS------KDQ--RTASKKIQFGIVYQESARGLSEDL 708 
WP_025434860      410 AFYCRDEKMLKTYRTGG--------DIHAQTTSVIYNIPFaEAVDknakgyKER--RTIAKNCNFGVFYGLFANGLQRTL 479  Peptoclos...
WP_014256699      409 AFYCRDKRMLETYRTGG--------DIHAQTTSVIYRIPFeEAADknaphyKER--RTIAKNCNFGVFYGLFPTGLQRTL 478  Acetivibr...
WP_012963026      365 SEYVGDERMIKAFREGK--------DLHRYTASVLLGKKE-EDIS------KEE--RQLAKAVNFGLIYGISARGLSDYA 427  Hydrogeno...
Q4UGW4           1578 AEIANDPKMIQAYQQNV--------DLHSLTASILKNKSI-NEVN------KEE--RQLAKAVNFGLIFGMSINGLRMYA 1640 Theileria...
WP_014142401      401 AAFSQDPTMLHAFANGL--------DLHQITADAAGVP------------------RKVGKGANFLTVFGGGWRAMVEQF 454  Streptomy...
Q05254            401 AALSGDRNMIEAFENGA--------DLHQMTADAAQVP------------------RKVGKTANFQKVYGGGAKALAEAV 454  Fromanvir...
1SL1_A            479 AHF------MARFDNGEyaheilngDIHTK-----------NQIA------AELptRDNAKTFIYGFLYGAGDEKIGQIV 535  Escherich...
XP_653960         438 ADFTKDHHLIEFFKSNT--------DVHRLIAAHWLKKNV-NDIT------DDE--RRKAKTIVYGCIYGIGPFSLADQL 500 
5DKT_A            503 --N---TyyglnmSLDQCLYFYNSFFEHYK---GIYKWHNQVKQKRALQyS-----TLSNRKVIF--------PYFSF-- 559  Plasmodiu...
REF_PBI:SPO1_146  709 raEgitM------SEDECEIFIKKYFKRFP---KVSKWIRDTKKHVKRH-Kyv--kTLTGRTRNLpdidsidqSKANEa- 775 
WP_025434860      480 --Q---FkaglhtTKEECETIINNLKAGYP---GLAKWQNETKTSAANT-Cyt--eTWLGRRRYLismlsedwGKRSFa- 547  Peptoclos...
WP_014256699      479 --K---FkaglnpTLSECETIIQNLKSGYP---GLAKWQDEVKKRAAIS-Cyt--eTWLGRRRYLlgirssdwGKKSFa- 546  Acetivibr...
WP_012963026      428 ------KsygidlSVDDAQKIRDRFFEYFR---SFKEWHERVKRELKQL-GgsrgyTLLGRSY----------VAHTF-- 485  Hydrogeno...
Q4UGW4           1641 --E---TgynlklTQTEAKEIYTSFFNNFK---GILNWHNSVKNSRPTMv-----rTLGNRLSVF--------ESFSF-- 1697 Theileria...
WP_014142401      455 --G---V------DEETAKRTLSAFADTYP---RVGVLAKQLADEARRT-Gfv--yTPTGRRLPV--------DRGRa-- 507  Streptomy...
Q05254            455 --G---I------SIPVAKRVHEAFSATYP---GVERLSKKLAMEAGRN-Gyi--vNAMGRRLPV--------DSSRt-- 507  Fromanvir...
1SL1_A            536 --G---A------GKERGKELKKKFLENTPaiaALRESIQQTLVESSQWvAge--qQVKWKRRWIkgldgrkvHVRSP-- 600  Escherich...
XP_653960         501 --H---V------SLDESKAFLESFLDQFP---AFKKWKEETITNASTT-Gfv--hTINNRRRRInnlt-dcnDKKTVae 562 
5DKT_A            560 --TKALNYPVQGTCADILKLALVDLYDNLKDIng--------kIILCVHDEIIIEVNKKFQEEAL-KILVQSMenSasYF 628  Plasmodiu...
REF_PBI:SPO1_146  776 -eRQAVNTPIQGTGSDCTLMSLILINQWLRESglr------srICITVHDSIVLDCPKDEVLEVA-KKVKHIMenLg-EY 846 
WP_025434860      548 -qRCALNTPIQGTAADILKLVCGRVIAGLPERpw-------lkPLLQIHDELIFEMPNDKVDEAV-RFIKSCM--Ea-KP 615  Peptoclos...
WP_014256699      547 -eRCALNTPIQGTAADILKLACGRIISGLPERlw-------lkPMLQIHDELVFELPEDKVDEAV-VFIKECM--Et-QP 614  Acetivibr...
WP_012963026      486 --PDAVNYPIQGTGADLLKLSVLMFDAEIKREkie------ahVVNLVHDEIVVECQMEKAQLVR-DLLERAMkhAgrVV 556  Hydrogeno...
Q4UGW4           1698 --TRSLNYPVQGTSADITKETMARLVDSVKPLna--------kIIICVHDEIILEVPEDNAEKAL-KMLIDTMvkSgeKY 1766 Theileria...
WP_014142401      508 --YAALNYFIQSGSRDITARALLRLADAGfa----------pyMRLPIHDEILFSFPRDAAAELT-REAARLMefT--IR 572  Streptomy...
Q05254            508 --YSALNYMIQSSSRDVTCRALIRLHEAGyt----------pyLRLPIHDEIVASLPASEAERAA-AHIGHLMqeQ--MG 572  Fromanvir...
1SL1_A            601 --HAALNTLLQSAGALICKLWIIKTEEMLVEKglkhgwdgdfaYMAWVHDEIQVGCRTEEIAQVViETAQEAMrwVg-DH 677  Escherich...
XP_653960         563 skRIAVNSPIQGTAADIIKMCMIEIFKKLHSSwvg------vqLLLNIHDEIVLEVPDHLLDEVC-VTLKHLMehI--VK 633 
5DKT_A            629 l------kKVKCEVSVKIA-ENWGS 646  Plasmodium falciparum 3D7
REF_PBI:SPO1_146  847 nefykflgDVPILSEMEIG-RNYGD 870 
WP_025434860      616 fp----efDVPIVAEAAVG-DSFGN 635  Peptoclostridium acidaminophilum
WP_014256699      615 fp----efDVPIVAEASVG-RNFGE 634  Acetivibrio clariflavus
WP_012963026      557 l------kQVPVEVESTIN-ERWLK 574  Hydrogenobacter thermophilus
Q4UGW4           1767 l------kKVPVEAMGSIG-DSWAD 1784 Theileria annulata
WP_014142401      573 --------GVLIPAEGEIGdRSWGS 589  Streptomycetaceae
Q05254            573 --------PVLVGTDPEVGkRSWGS 589  Fromanvirus L5
1SL1_A            678 wn-----fRCLLDTEGKMG-PNWAI 696  Escherichia phage T7
XP_653960         634 l-------EVPLVVTVETG-KKWGS 650 
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