2YIK,4CJ0,1DAQ,1OHZ,2VN5,6KG9,3KCP,2OZN


Conserved Protein Domain Family
Dockerin_1
?
pfam00404: Dockerin_1 (This model is not part of the current CDD release)
Dockerin type I domain
The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium. This family contains two copies of the repeat.
Links
?
Statistics
?
PSSM-Id: 513423
Aligned: 85 rows
Threshold Bit Score: 47.182
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
2YIK_A  547 YGDLNGDQKVTSTDYTMLKRYLM------KSIDRFNTSEQAADLNRDGKINSTDLTILKRYLL 603  Acetivibrio thermocellus
Q06851 1789 VGDIVKDNSINLLDVAEVIRCFN-------ATKGSANYVEELDINRNGAINMQDIMIVHKHFG 1844 Acetivibrio thermocellus ATCC 27405
Q7UF11   71 HLDVNRDGTITELDALQVINVLQad--htALGAGKSSVEARHDVNQDGRVSAVDALWVINFVN 131  Pirellula sp.
Q7UWM1 1689 QTDVNNDGQVSALDALLVINALNq--------pNTQMSRAFLDVNEDGATTAIDALRVINALG 1743 Pirellula sp.
Q7ULP1 1723 RYDVDRNQSVAPLDALRIINYLEangpgrLEPGNMQSFPGYLDVSGNGEVTSLDALMVINEIN 1785 Pirellula sp.
Q7UF08 1985 REDTNADGTVTASDALRVINYMNnesiakAEGEQINTGWSRLDVNGDGSVTALDALLVINKLN 2047 Pirellula sp.
Q7UF12 1247 AMDSNRDGSISALDALIIINFLShssmsePIDVGVSNMALTFDANEDGFVTARDALVVINYLT 1309 Pirellula sp.
Q8XKX6 1298 SADINEDGSINVGDLSIVSKYQG-------EVISGNALSEKSDINKDGVVDKADIQIVMGKIL 1353 Clostridium perfringens
P26831 1577 TGDFNGNGKIDIGDLAMVSKNIG------------STTNTSLDLNKDGSIDEYEISFINHRIL 1627 Clostridium perfringens str. 13
3KCP_A  249 vGDIVKDNSINLLDVAEVIRCFN------ATKGSAN-YVEELDINRNGAINMQDIMIVHKHFg 304  Acetivibrio thermocellus ATCC 27405
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap