5D87,5YBW,5B53,7N2T,3DWG,4D96,1WKV


Conserved Protein Domain Family
PALP

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pfam00291: PALP (This model is not part of the current CDD release)
Pyridoxal-phosphate dependent enzyme
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Statistics
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PSSM-Id: 513323
Aligned: 149 rows
Threshold Bit Score: 66.9186
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5D87_A        12 LLDSVGQTPM-----VQLHQLF----PKH--E-VFAKLEYMN-PGGSMKDRPAK---YIIEHGIKHgl--iTENTHLIES 73  Staphylococcus ...
Q2IRQ4        75 VSLGEGGSPL-----RQLRAVG----DQLglKrLYGKDESGN-PTWSFKDRLAC---IAVSVAKQM------GAKTIVSS 135 Rhodopseudomona...
WP_009949332  75 VTLAEGATPL-----LELDEG------------VLLKDERRN-PTGSFKDRFFT---TAVSWAREA------GASTVAVA 127 Saccharopolyspora
WP_003813778  60 ITLGEGRTPC-----LDAPALA----HAHgvAqVWLKCESGN-PTGSHKDRMAA---QLVSRAVLA------GAKRLAAA 120 Bordetella bron...
Q7NI22        74 VSFGEGFTPL-----LPIDALT----RTWglEtVWIKDDGLN-PTGSFKARGAS---CGISKAKEL------GIREVALP 134 Gloeobacter vio...
WP_011032087  60 lTTEAGPITYksealAKELGLSnlyiGFSg---YWPEREALI-KTCSFKELEAH---PTMQLLKES------GGKAIVLA 126 Methanosarcina ...
WP_012188772  68 APTHVGGTPL-----LHAQRFG----GLLglPrLYIKDERYS-PTNSFKDRQAA---LAVAALVSN------DIRECVIA 128 Herpetosiphon sp.
Q5ZUZ9        98 LTFSF---PL-----HHLFKKS-------------YVLELFHgPTLSFKDLGTQffsECLLHLIEN------KSAKVLVA 150 Legionella pneu...
Q9ZMX5        74 KRYENFDNPK-----NPAPIFA------LneR-LFVQELYHG-PSLAFKDMALQplaSLFSNLAVGk----NEKYLVLVS 136 Helicobacter py...
WP_012051144  82 GFRHRGIAPL----------------QQLghN-EWILQLFHG-PTRSSKDFAAQ----LQARFVRHflgaeCERVMLVGA 139 Pseudomonas
5D87_A        74 TSGNLGIALAMIAK--IK-GL-KLTCV--VDPKISP-TNLKIIKSYGA---NVEMVeepdahGGYLMTRIAK--VQ---E 138 Staphylococcus ...
Q2IRQ4       136 SSGNAGAAAAAYAA--KA-GI-PCVVF--TFGWAAG-PMVTQMRAYGA---KVVTV---------PQKEDRWrfME---H 193 Rhodopseudomona...
WP_009949332 128 SSGNAGVAAAAYAA--AA-GL-ESVVV--TTGEISG-TSSGLVRRFGG---RLLFG---------DTPEQRW-------A 181 Saccharopolyspora
WP_003813778 121 SSGNAGVALAAYGA--AA-GL-RVDIA--IAPTCPP-RQRAAMEQFGA---RLHSF---------ADSLARWpyVA---T 178 Bordetella bron...
Q7NI22       135 TAGNAGGAWACYGA--AA-GL-RVHVA--MPRDAPA-VNQLECRLYGA---DLTLV------DGLISDAGKL--IA---Q 193 Gloeobacter vio...
WP_011032087 127 SAGNTGRAFAYSSS--LT-GT-DAYIV--VPDSGV--SSIWLPEEPAN---SIHLIsm--tpGNDYTDAINL--AG---R 188 Methanosarcina ...
WP_012188772 129 STGNAAVAYASACA--AV-GI-KLWVF--MTSVVPE-AKLREAALFGA---EVIKV------SGNYDQTKQI--AA---D 187 Herpetosiphon sp.
Q5ZUZ9       151 TSGDTGAAIAHALD--GKrDL-EGIIL--FPKDKLTfRQQSQITCWGE---NIRALa----vNGSFDQCQQL--VKlvfA 216 Legionella pneu...
Q9ZMX5       137 TSGDTGPATLEGLA-----GMpNVFVVclYPKDGT--SLVQKLQMVTQnasNLKVFg----vSGDFDDAQNA--LK---N 200 Helicobacter py...
WP_012051144 140 SNGDTAVAAIEALRhcPAaG--LLALY--PSAGTPA-DRAAVMRSAASdsvSCVAV------DGSFDDCQSL--VS---A 203 Pseudomonas
5D87_A       139 LLAT-----IDDAYWINQFAne------lNWQShYHGAGTEI----V---ETIK----QPIDYFVAPVGTT-GSIMGMSR 195 Staphylococcus ...
Q2IRQ4       194 AVRQ------YGWFPTSPFFgpavgsnpyGIEG-YKTLAYET----V---EQLGw---RAPDWCILPVCYG-DALIGMWR 255 Rhodopseudomona...
WP_009949332 182 ILREh----ADEWTVLTNTSevpvsslwvGIEG-YKTIAYEI----V---RDLG----DVPEVVLAPVSRG-DGFAGMWL 244 Saccharopolyspora
WP_003813778 179 LCRDegafaGTNYLNPPVGThp------yGVEG-YKPIAAEL----A---AQCD----NLPTDIIVPTARG-DLLWGICL 239 Bordetella bron...
Q7NI22       194 GVRE------HGWFDVSTLKep------yRIEG-KKTLGLEL----A---EQMNw---QLPDAILYPAGGG-VGIIGIWR 249 Gloeobacter vio...
WP_011032087 189 LAKL------PGMVPEGGARnv------aRREG-MGTVMLDA----A---VTIG----KMPDHYFQAVGSGtGGMSAWEA 244 Methanosarcina ...
WP_012188772 188 FAQN------RNIIYDRGANsi------pAREA-MKTISYEI----C---EQLGw---QAPDWYIQAVSGG-LGPLGVYH 243 Herpetosiphon sp.
Q5ZUZ9       217 KREH------KGILTTANSMniar-llpqIIFYaFTSIQLAL---------RHN----HSVN-FIVPGGNL-GNVTACYW 274 Legionella pneu...
Q9ZMX5       201 LLKDd---dFNEALKARQLKls------vANSVnFGRIAFQIvyhiWgflELYKkgaiNSKEKITLAIPSG-NFGNALGA 270 Helicobacter py...
WP_012051144 204 LLRD-----WPCPGLIPVSFns------tNWVGvLAQIVFYF--------------------HAALQLGGG-IRPVGFSI 251 Pseudomonas
5D87_A       196 KIKE----VHPN--------AQIVAVDAK--GSVIFGDkp--------------------iNRELPGIGAS--RVPEILN 239 Staphylococcus ...
Q2IRQ4       256 GFTEmkaaGWIDr------mPKMVAAEVYgsIGRALDDdleapp-----------ampktfDTVSGSIGAV---QGTYQA 315 Rhodopseudomona...
WP_009949332 245 GFQEl--rELGVvs----rtPRMVAVE----RYPSLSRalregaep-------ppagdvagPVEATSISNP---QATVMS 304 Saccharopolyspora
WP_003813778 240 GWQAl--lRRGAia----rlPRLHAVEPY----PRLAHalaagda----------rgvweqPTAQYSIAGG---TVTLQS 296 Bordetella bron...
Q7NI22       250 GLQQlkamGWVTgs-----lPRLIVVQAE--GCAPLVKafeegrte--------sefwpdaRTFASGLRVPk-ALGDFLV 313 Gloeobacter vio...
WP_011032087 245 SLRLrddgRFGSk------lPKLQLAQNL--PFVPMYNawkagrreiipdidmkdakkqieETYATVLTNR--APPYSIT 314 Methanosarcina ...
WP_012188772 244 GFAElhamGLTQr------vPQTAIIQAE--GCSPMVQafqagks---------vaekvvpNTRIAILSTGdpGKIYTRL 306 Herpetosiphon sp.
Q5ZUZ9       275 AKML----GFPV--------EQILIANNI---NSALGEflltgay----------qaksvtKTLATAMDVGe-PSNLDRL 328 Legionella pneu...
Q9ZMX5       271 FYAK----KMGL---------NIAKIKVVtnSNDVLREfiet----------------gryDLTKRSLKQT--FSPAMDI 319 Helicobacter py...
WP_012051144 252 PTASfaeiYAGFiaqkmglpINQIIVSTN--RNDALHRfihcnry----------srgstsQTLSPVMDFSlfSNLERFV 319 Pseudomonas
5D87_A       240 RSEI---NQvi---------hVDDYQSALGCRKLIDYEGIFAGGSTGSIIAAIe-QLI-TSIEEGATIVTILPD 299 Staphylococcus aureus...
Q2IRQ4       316 LEIV---RKsggr-----avtISNDDTMRWQRLLATREARYLEPASAGGLVAVerLAKsGIIKPDDVVVSLLTA 381 Rhodopseudomonas palu...
WP_009949332 305 LRVI---REsggt-----avaCTDADLHEAAERLG-RAGVGVELSSAAGLVGIdaLRRdSLLEPGDRAVALVTS 369 Saccharopolyspora
WP_003813778 297 MQAL---ARsggr-----avdVADEQAARARAALG-ALGIAAELSSAAALAAVpaLKAaGALDAGSRVALILTS 361 Bordetella bronchisep...
Q7NI22       314 LQAV---REtggt-----aiaVSDEQCGEMMKLLAGRTGIFAAPEGAATLAAAkiLRErGDLASRDRVVLINTG 379 Gloeobacter violaceus
WP_011032087 315 GGLYdalVDtdgi-----myaITREEALEAKALFESLEGIDILEPSAVAAASLlkAVEaGNVEKDDVILLNIAG 383 Methanosarcina mazei
WP_012188772 307 WQRI---QTsggt-----meaVTDEEAFSAMRLLARTEGISVEPATAVAFAGLqkMVAqGQVNPEELIVVNCTG 372 Herpetosiphon sp.
Q5ZUZ9       329 FVLF---NNyseckkqmnaesVSDEQIKQAILHCYNKYHYIICPHTATAYHRL------STINQDKPWVIVAPG 393 Legionella pneumophil...
Q9ZMX5       320 LKSS---NVeral-----fslFGFERTLELMQALEEEKFYALKP---KELALLqeHFScASCSDE-DCLKTIQE 381 Helicobacter pylori J99
WP_012051144 320 WELY---DRdgg-------atRALMEHFEACGELSIGNRQWL--HARMLFDSY--AVDdALIREE-----IVTl 374 Pseudomonas
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