5XQM


Conserved Protein Domain Family
ubiquitin

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pfam00240: ubiquitin (This model is not part of the current CDD release)
Ubiquitin family
This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites.
Statistics
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PSSM-Id: 513278
Aligned: 60 rows
Threshold Bit Score: 55.2692
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5XQM_A  24 IKVVG--QDSNEVHF-RVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTL-EMEDD-DVIEVYQEQ 94  Caenorhabditis elegans
Q9WVS6   3 VFVRF--NSSYGFPV-EVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQ-SIVHIVQRP 73  house mouse
P55853  15 IKIKVvgQDSNEVHF-RVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTL-EMEDD-DVIEVYQEQ 87  Caenorhabditis elegans
P63166  22 IKLKVigQDSSEIHF-KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEE-DVIEVYQEQ 94  house mouse
Q12306  24 INLKVs-DGSSEIFF-KIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDN-DIIEAHREQ 95  Saccharomyces cerevisiae ...
O13351  36 INLKVvgQDNNEVFF-KIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAEL-DMEDG-DQIEAVLEQ 108 Schizosaccharomyces pombe...
P55852  18 INLKVkgQDGNEVFF-RIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDEL-DMEDG-DEIDAMLHQ 90  thale cress
O42967   6 IRVTTvdQ---KVGIfQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEIlHDATDlVTFHLVIAV 78  Schizosaccharomyces pombe...
Q9UMX0  39 VTVKT---PKEKEEF-AVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHDG-LTVHLVIKT 108 human
Q9VWD9  11 VVVKT---PKDKKTV-EVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIMKDTDTLQMH-NIKDN-LTVHLVIKA 80  fruit fly
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