2UXC,6ND4,3JAP,5XYI,6DZK


Conserved Protein Domain Family
Ribosomal_S4

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pfam00163: Ribosomal_S4 
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Ribosomal protein S4/S9 N-terminal domain
This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.
Statistics
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PSSM-Id: 459696
Aligned: 392 rows
Threshold Bit Score: 35.2157
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2UXC_D           3 RYIGPVCRLCRREG-VKLYLKGeRCYSP-Kca-----mERrPYP--PGQHGQKRarRPSDYA-VRL----REKQKLRRIY 68  Thermus therm...
jgi:Hmuk_2590   16 PYQGE--RIADEQNlIGRYGL--------K--------NKeELWraQSELRSYR--REARKL-LGR----AEGEGSRFEA 70 
BAJ51460        11 KRIRKKYETPRH-----PWRRE-ILEEElKlmgeyglrNKrEIWraASQLRKYR--ALARRLfTAV----GEK---RIAE 75 
A0B9L2           5 GKSHKTYDRPRK-----PWEAD-RMANEvEliktyglrNKrELWkaESILRKYR--RVGRML-LAS----KARGEARADI 71  Methanothrix ...
Q8TVC0          10 KYETPRH----------PWEAe-RLEYErKlmrkyglrRKkELWrhQTQLKRWR--ERAKEL-M------ARTDPEAQRE 69  Methanopyrus ...
EDY35834         5 RFNRKKYETPKH-----PWEAD-RIKEEwElqkkyglkNKrEIWkaKSLLRNFR--GQARQLqAKLrygnPQAEKEQKLL 76 
Q6KZP7          10 KYSTPRH----------PWEKd-RIDAErQllikyglkNKrELWraQTILTNFR--TQARTLqAKL----RYNDPLAIKQ 72  Picrophilus t...
EQB68226        10 LYSTPRH----------PWEKd-RIDEErKtinlyglkNKkELWrsQASLDSIR--AQARELqART----RRNDPLAIKQ 72 
jgi:Calag_0549   1 -mgdpknSRKRWEGpGHPWIKs-RLETEiKiigryglrNKkELWtaETIIRKVR--HQARHL-LAL----PEPQRSEASK 71 
jgi:Arcpr_1026   5 KRHRKKYVTPRK-----PWDKV-RLEREaQllikyglrNKrELWrfENILRKYR--RVARDLlSKVnlpgREGEIARAKA 76 
2UXC_D          69 -GISERQFRNLFEEA-S-------KK-KGV-TGS----VFLGLLE 98  Thermus thermophilus HB8
jgi:Hmuk_2590   71 ----DEFLTRLKRLGvL-------NE-TDA-LDDvlslDVTDVLE 102
BAJ51460        76 ---ESKLIGRLNRLG---------LLpQGAtLDDvlklTVKDFLE 108
A0B9L2          72 --EAAAVINRLSRFGiL-------K--DGAdLDAilslKITDILE 105 Methanothrix thermoacetophila PT
Q8TVC0          70 ---REALFRKLYDLGiLdkkpeeaTL-DDIl-RL----TVEDVLE 105 Methanopyrus kandleri AV19
EDY35834        77 -------FDKLIRLGiLnea--naTL-DAV-LSL----TVEDILR 106
Q6KZP7          73 fQLLIGKLSRLNLLGeN-------ATlDDV-LSL----NIEDILE 105 Picrophilus torridus DSM 9790
EQB68226        73 lNLLLARLNRYKISTgN-------ASlDDI-LSL----TIESVLE 105
jgi:Calag_0549  72 -SLLDRLFKLGLINKdS-------SL-DDI-LGL----TSENVLE 102
jgi:Arcpr_1026  77 nAVIKKLVRIGVLEEnA-------TL-DDI-LNL----TVEDFLE 108
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