6SJC,4DPG,1N9W


Conserved Protein Domain Family
tRNA-synt_2

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pfam00152: tRNA-synt_2 
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tRNA synthetases class II (D, K and N)
Statistics
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PSSM-Id: 425487
Aligned: 88 rows
Threshold Bit Score: 202.796
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SJC_A       124 SEELRLKYRYLDL-RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKS------TPEGARDFLVPYRHEp----G 192 Thermus thermop...
EKC34078      83 SHEHLRQFLHLRP-KTALTSAVLRIRNTATMAVHKYFQENGYIFIHTPILSSNd-----CEGAGQLFTVKVSEKndddeK 156 Pacific oyster
Q7NBK8        31 yMYEDFRKNFIKTiKNERYSNLLKLFSVINKLTYIWMENNNVEIVNLPITTQSvtspmgLGSDSKPYKVISKSNln---- 106 Mycoplasma gall...
Q6C700       128 KQEFLRTLPALRW-RTSVNSSTLRYRSFCMAQMTNFFAENDFVQTNPPLLTSSd-----CEGAGEVFKVAGGGKg----- 196 Yarrowia lipoly...
Q8BGV0       135 PLEYLRQYPHLRC-RTNALGSILRVRSEATAAIHSYFKDNGFVHIHTPVLTSNd-----CEGAGELFQVEPSSKikgpkE 208 house mouse
Q8U4D3       114 sPELLLDYRHLHI-RTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGa-----VEGGATLFKL----------- 176 Pyrococcus furi...
Q8SQK8       124 SVNAILTNGHLGL-RTKKRQLFLKARGHLLKIIRDFYFEGEYTEVTPPTMVQTq-----VEGGSTLFKL----------- 186 Encephalitozoon...
1_pfamImport   1 DVDVQLNNRHMLI-RGENVSKILRVRSTVTQCFRDHFFSRGYYEITPPTLVQTq-----VEDGYTLFKL----------- 63 
Q97DB5       160 NIDTLIENRILSM-RNSRVNSVFKIETEIAHGFSEFLVKNGFTEIYTPKIVSEg-----AEGGTELFKL----------- 222 Clostridium ace...
Q7SFD2       259 TMLTHLDNIIMHK-RAPVQQAIADIRMEVKDLFRSYLKSHGFKEFEPPCLIGAa-----SEGGANVFRM----------- 321 Neurospora crassa
6SJC_A       193 ----LFY-----ALPQSPQLFKQMLMVAg-LDRYFQIARCFRDEDLRADRQP-DFTQLDLEM--SFVEVED-VLELNERL 258 Thermus thermop...
EKC34078     157 klipEFFts-pvFLTVSGQLHLEAVASG--ISKVYTFSPAFRAERSQTSNHLaEFYMIEAEL--SFTECLEdIMQVMEGL 231 Pacific oyster
Q7NBK8       107 ---yEFY------LADSMQFHLELMLRAkdISSVGYITNTFRGEQVD-NRHLhQFNHFEIEMlgNLNNCKEkIIDYIKFI 176 Mycoplasma gall...
Q6C700       197 ---dKFFgdkpaYLTVSTQLHLEVLAAA--VGRVWTFTPAFRAENSDTNRHLsEFWMAEAEI--SFIDDLEpLMDLAEGM 269 Yarrowia lipoly...
Q8BGV0       209 ----SFFdv-paFLTVSGQLHLEVMSGA--FTQVFTFGPTFRAENSQSRRHLaEFYMVEAEI--SFVESLQdLMQVMEEL 279 house mouse
Q8U4D3       177 ----KYFdk-yaYLSQSAQLYLEAAIFG--LEKVWSLTPSFRAEKSRTRRHLtEFWHLELEA--AWMDLWD-IMKVEEEL 246 Pyrococcus furi...
Q8SQK8       187 ----DYYge-daYLTQSSQLYLETVVPA--SHRAYCIMPSYRAEKSRTRRHLsEYTHVEAEM--ADIDLDG-LISSIEAL 256 Encephalitozoon...
1_pfamImport  64 ----NYFge-qvYLTQCSQLYLETCIPA--LGDTFCIAQSYRAEQSRTRRHLsEFTHVEAEC--PFISFDD-LLNGLEDL 133
Q97DB5       223 ----KYFdk-eaYLAQSPQFYKQMMVAAg-YERVFEIGHVYRAESHDTKRHLnEYISMDLEM--GFINDEMdLIRFEIEL 294 Clostridium ace...
Q7SFD2       322 ----PYFdk-eaFLAQSPQFYKQFEIAGg-RKRVFSIGPVFRAENSNTPRHMtEFTGLDLEM--EIKKDYReVLLMLEGV 393 Neurospora crassa
6SJC_A       259 MAHVFREA-LGV----------------------------ELPLp-FP-------------RLSYEEAMER--------- 286 Thermus thermop...
EKC34078     232 VKSLTREVmETSaddirfvhrrn------sassdlltaidDMINkeFI-------------RLPYVEALNIvnkicespe 292 Pacific oyster
Q7NBK8       177 VNELIKKHknlidffntnnsnrlkkwlsnevidlkhdhviS-----LL-------------KLEYPVGIEKiylnk---- 234 Mycoplasma gall...
Q6C700       270 VKSCLAPLmEEGnkarndlldarr----saeqkeelldrwDMANcdFP-------------RLTYKQAIKIlnlqhlkep 332 Yarrowia lipoly...
Q8BGV0       280 FKATTEMVlSHCpedvelchqf--------iaagqkgrleHMLKnnFL-------------IISYTEAIEIlkqasqnf- 337 house mouse
Q8U4D3       247 VSYMVQRTlELRkkeiemf--------------rddlttlKNTEppFP-------------RISYDEAIDIlqskgi--- 296 Pyrococcus furi...
Q8SQK8       257 VSYSMRRFyEEMksdilsv--------------fpefefhKVPRtpFK-------------RIKYSEAIELlkskgykke 309 Encephalitozoon...
1_pfamImport 134 ICDVVDRVlKSPaggllhd---------------inptfkPPKRp-FR-------------RMNYTEAIEWlrehdikkd 184
Q97DB5       295 LKYIFQNVrQKCsksiellk-------------veiptiqE-----VP-------------IMPLNEAITIlrevyn--- 340 Clostridium ace...
Q7SFD2       394 LLHIFRGIkERCaa------------------------eiELVRsvYPaeefllpepgkevRLTFAEGQKLlreegpee- 448 Neurospora crassa
6SJC_A           --------------------------------------------------------------------------------     Thermus thermop...
EKC34078     293 lkvmlteknpyiwdpasdslttpmvsltlrddldqklnvtsltnpvdvyisnfnpviqkseenftlsvqdfdsfnatqtt 372 Pacific oyster
Q7NBK8           --------------------------------------------------------------------------------     Mycoplasma gall...
Q6C700           --------------------------------------------------------------------------------     Yarrowia lipoly...
Q8BGV0           --------------------------------------------------------------------------------     house mouse
Q8U4D3           --------------------------------------------------------------------------------     Pyrococcus furi...
Q8SQK8           --------------------------------------------------------------------------------     Encephalitozoon...
1_pfamImport 185 dgtfyefgeiielypaetldlmtkemmsvpcwmligwisqmvamldkpegvavqhcleqiaecypqalvyalmissetyq 264
Q97DB5           --------------------------------------------------------------------------------     Clostridium ace...
Q7SFD2           --------------------------------------------------------------------------------     Neurospora crassa
6SJC_A           --------------------------------------------------------------------------------     Thermus thermop...
EKC34078     373 elcrimtfnstegrstvftvrpltfnltvnvievqnrtnmshlnvraagvslsklnnfthifssfptgevslafcidqtv 452 Pacific oyster
Q7NBK8           --------------------------------------------------------------------------------     Mycoplasma gall...
Q6C700           --------------------------------------------------------------------------------     Yarrowia lipoly...
Q8BGV0           --------------------------------------------------------------------------------     house mouse
Q8U4D3           --------------------------------------------------------------------------------     Pyrococcus furi...
Q8SQK8           --------------------------------------------------------------------------------     Encephalitozoon...
1_pfamImport 265 fedsaighkqhqfvsrcsqiynkwlqnfdpkcktsvply----------------------------------------- 303
Q97DB5           --------------------------------------------------------------------------------     Clostridium ace...
Q7SFD2           --------------------------------------------------------------------------------     Neurospora crassa
6SJC_A           --------------------------------------------------------------------------------     Thermus thermop...
EKC34078     453 enylelsrqcltltscgltletqlyfavcmywnvtedkwsssgcqvgqqttpasmhcqcthltafsgsflvapnfvdpfa 532 Pacific oyster
Q7NBK8           --------------------------------------------------------------------------------     Mycoplasma gall...
Q6C700           --------------------------------------------------------------------------------     Yarrowia lipoly...
Q8BGV0           --------------------------------------------------------------------------------     house mouse
Q8U4D3           --------------------------------------------------------------------------------     Pyrococcus furi...
Q8SQK8           --------------------------------------------------------------------------------     Encephalitozoon...
1_pfamImport     --------------------------------------------------------------------------------    
Q97DB5           --------------------------------------------------------------------------------     Clostridium ace...
Q7SFD2           --------------------------------------------------------------------------------     Neurospora crassa
6SJC_A           --------------------------------------------------------------------------------     Thermus thermop...
EKC34078     533 daalfltffsnpvvvscviliwliyftlltwakkqdrldkvwdvenlinlrtqyrggviiahennpdhkyaylvcvitgw 612 Pacific oyster
Q7NBK8           --------------------------------------------------------------------------------     Mycoplasma gall...
Q6C700           --------------------------------------------------------------------------------     Yarrowia lipoly...
Q8BGV0           --------------------------------------------------------------------------------     house mouse
Q8U4D3           --------------------------------------------------------------------------------     Pyrococcus furi...
Q8SQK8           --------------------------------------------------------------------------------     Encephalitozoon...
1_pfamImport 304 -------------------------------alayrvtrkakraetvnnfstvlqkvpsdllkraflkmcntpeaflflr 352
Q97DB5           --------------------------------------------------------------------------------     Clostridium ace...
Q7SFD2           --------------------------------------------------------------------------------     Neurospora crassa
6SJC_A       287 ------------------------------------------------------------------------------YG 288 Thermus thermop...
EKC34078     613 wknagttssvslsfagteghsgrhclsesvpgrqcflsgyedwflvttshslgdlrslsvwhdssgksphwsvscewgDD 692 Pacific oyster
Q7NBK8       235 --------------------------------------------------------------------------ndfiES 240 Mycoplasma gall...
Q6C700       333 ----------------------------------------------------------------------fahrpdyeVG 342 Yarrowia lipoly...
Q8BGV0       338 -----------------------------------------------------------------------aftpkwgVD 346 house mouse
Q8U4D3       297 -------------------------------------------------------------------------nvqwgDD 303 Pyrococcus furi...
Q8SQK8       310 ----------------------------------------------------------------------dntdfelgDD 319 Encephalitozoon...
1_pfamImport 353 shficshallcvshwvlgigdrhlsnfminvetggmigidfghafgsatqnfelkqlkkggtwteevntkeinwyplqKD 432
Q97DB5       341 -------------------------------------------------------------------------kkeltTD 347 Clostridium ace...
Q7SFD2       449 -----------------------------------------------------------------------frnvtddED 457 Neurospora crassa
6SJC_A       289 SDKPDLRFGLElkevgplfrqsgfrvfqeaesvkalalpkalsrkevaeleevakrhkaqglawarveeggfsggvakfl 368 Thermus thermop...
EKC34078     693 LQRAHEKALVK--------------------------------------------------------------------- 703 Pacific oyster
Q7NBK8       241 VNSKGEQYLIN--------------------------------------------------------------------- 251 Mycoplasma gall...
Q6C700       343 LRSEHEKWLAT--------------------------------------------------------------------- 353 Yarrowia lipoly...
Q8BGV0       347 LQTEHEKYLVR--------------------------------------------------------------------- 357 house mouse
Q8U4D3       304 LGADEERVLTE--------------------------------------------------------------------- 314 Pyrococcus furi...
Q8SQK8       320 IPDAAERYLVEv-------------------------------------------------------------------- 331 Encephalitozoon...
1_pfamImport 433 IREAPERVMTD--------------------------------------------------------------------- 443
Q97DB5       348 IDHEGEELIGRfv------------------------------------------------------------------- 360 Clostridium ace...
Q7SFD2       458 MSTPQEKALGAiv------------------------------------------------------------------- 470 Neurospora crassa
6SJC_A       369 epvreallqatearpgdtllfvagprkvaatalgavrlraadllglkREGFRFLWVVDFPllewdeeeeawtYMHHPFTS 448 Thermus thermop...
EKC34078     704 -----------------------------------------------HCGNVPVFVTDYP------------EELKPFYA 724 Pacific oyster
Q7NBK8       252 -----------------------------------------------KFKNNIIWLSNFP------------WQLVPFYQ 272 Mycoplasma gall...
Q6C700       354 -----------------------------------------------EYFISPVFVTDYP------------KEQKPFYM 374 Yarrowia lipoly...
Q8BGV0       358 -----------------------------------------------HCGNIPVFVINYP------------SELKPFYM 378 house mouse
Q8U4D3       315 ------------------------------------------------EFDRPFFVYGYP------------KQIKAFYM 334 Pyrococcus furi...
Q8SQK8       332 -----------------------------------------------VGDGCPVFLTHFL------------VGHKPFYM 352 Encephalitozoon...
1_pfamImport 444 ------------------------------------------------TINEPILLCRFP------------AEIKSFYM 463
Q97DB5       361 ---------------------------------------------keKYNSDFVFLTHYS------------KDKRPMYT 383 Clostridium ace...
Q7SFD2       471 ---------------------------------------------rkKFNTDFYVLDKFP------------EGARPFYA 493 Neurospora crassa
6SJC_A       449 PHPEDlpllekdpgRVRALAYDLVLN-GV-EVGGGSIRIHDPRLQARVFRLLGIGeeeqrEKFGFFLEALEY-GAPPHGG 525 Thermus thermop...
EKC34078     725 RLNED---------HKTVAGLDLLIP-GVgELCGGTLREERYDILHQKLKSKNLL-----NTLSWYLELREF-GSCPHGG 788 Pacific oyster
Q7NBK8       273 KIEGDy-----------AINSDLLI--GIgETVGSGQRCITYKETYDSILKHKNNp----KHYDWYLKMKLE-SELETSG 334 Mycoplasma gall...
Q6C700       375 KQSPHd--------SQTVACFDLLMP-HIgEVIGGSVREDNYDTLLKNIETTGMDk----SALEWYLELRKQ-GSTPHGG 440 Yarrowia lipoly...
Q8BGV0       379 RENEDg-------pQNTVAAVDLLVP-GVgELFGGSLREERYHVLEQRLARSGLT-----KAYQWYLDLRKF-GSVPHGG 444 house mouse
Q8U4D3       335 KEDPNd--------PRKVLAADMLAPeGYgEIIGGSQREDDYEKLLNRILEEGMDp----KDYEWYLDLRKY-GSVPHSG 401 Pyrococcus furi...
Q8SQK8       353 RKDENd--------KGLTESTDLLFP-GIgEILGGSMRQDTYEDLIEGFRRENINi----DPYYWYLDMARF-GPCKHGG 418 Encephalitozoon...
1_pfamImport 464 QRCSEd--------KRLTESVDLLMP-NVgEVVGGSMRTWDSEELLEGYRREGIDp----TPYYWYTDQVGL----STAG 526
Q97DB5       384 MPCGKn----------LTHSFDLIFR-GM-EITTGGQRINDYDMLRQSMLDKGLKv----ESFKSYLDVFKF-GMPPHGG 446 Clostridium ace...
Q7SFD2       494 KLDDAn--------PKVTNAFDFFLR-GQ-EILSGGQRINDPEELEARIIQKGVDpk--sAGIKDYVDVFRQaGVPAHGG 561 Neurospora crassa
6SJC_A       526 IAWGLDR------LLALMTGSPSIR------------------------------------------------------- 544 Thermus thermop...
EKC34078     789 FGMGFDR------YLQFLLGMPSIK------------------------------------------------------- 807 Pacific oyster
Q7NBK8       335 FGLGLER------LVLFIIDEKDIR------------------------------------------------------- 353 Mycoplasma gall...
Q6C700       441 FGMGFER------LISYATGIENIR------------------------------------------------------- 459 Yarrowia lipoly...
Q8BGV0       445 FGMGFER------YLQCILGVDNIK------------------------------------------------------- 463 house mouse
Q8U4D3       402 FGLGVER------LVAWVLKLDHIR------------------------------------------------------- 420 Pyrococcus furi...
Q8SQK8       419 YGLGFER------FLMGLMRYESVD------------------------------------------------------- 437 Encephalitozoon...
1_pfamImport 527 LRSSCSRkpawclTEVTVCVSEEVRhlpsrglrcgpgafphlaaeqtshtrrlpvpsihptlpplntlahsdvtalkcat 606
Q97DB5       447 LAIGLER------ITIKLLNLDNIR------------------------------------------------------- 465 Clostridium ace...
Q7SFD2       562 GGIGLDR------VVAWFLNLPSVH------------------------------------------------------- 580 Neurospora crassa
6SJC_A       545 -------EVIAFPKNK 553 Thermus thermophilus
EKC34078     808 -------DVTAFPRWT 816 Pacific oyster
Q7NBK8       354 -------NVQLLPRET 362 Mycoplasma gallisepticum
Q6C700       460 -------DVTAFPRWV 468 Yarrowia lipolytica
Q8BGV0       464 -------DVIPFPRFT 472 house mouse
Q8U4D3       421 -------WASLFPRTp 429 Pyrococcus furiosus DSM 3638
Q8SQK8       438 -------EATLYPRKV 446 Encephalitozoon cuniculi GB-M1
1_pfamImport 607 hmfkrlfKLSFFPLLL 622
Q97DB5       466 -------EAAFFVRDK 474 Clostridium acetobutylicum
Q7SFD2       581 -------LAAYYPRTP 589 Neurospora crassa
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