4GP8,7DEG,3WFD,8BGW


Conserved Protein Domain Family
COX1

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pfam00115: COX1 (This model is not part of the current CDD release)
Cytochrome C and Quinol oxidase polypeptide I
Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.
Statistics
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PSSM-Id: 513161
Aligned: 510 rows
Threshold Bit Score: 61.0495
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GP8_A         25 KATLYFLVLGFLALIVGSLFGPFQALNY--------------GnvDaypllkrlL--PFV-----QSYYQGLTLHGVLNA 83  Thermus thermo...
Q97XY4         71 RIGLIGVFFASVLAGIQGLLGYLAMHYYvdpegil-glinflP------------------------FNITRALHLNMAV 125 Saccharolobus ...
CBL43845      302 KATYKFFALAMILFGVQIFAGIAAAWDfvkpfgi--slndflP------------------------FTASRSFHAIIQI 355
14_pfamImport   1 EKLLKYIPIVALFVLIQMVLGGYLAHIyadptdhfiisqdilP------------------------FNVTRALHTNIAI 56 
WP_006929350  276 KKLLKYVPIVAGLFLVQLIIGGYLSHLytepskdfiisqeilP------------------------FNVLRSIHTQLAI 331 Caldithrix abyssi
WP_015262022    8 QVARRYTLYAVFLFGVQGIVALLGATS------------------L--------V---IPdlpspVSGEYGRAVHLALAT 58  Desulfitobacte...
Q24YD8          8 QIARRYVLYGVFLFAIQGIVALLGATS------------------L--------I---FPdlpspVSYAYGRAVHLALAT 58  Desulfitobacte...
WP_013294400   14 GVVKVYAVITGVVILLMMLFGLTMRLTQ--------------A--Q--------VlsIDP-----VMFYQLMTAHGIGMV 64  Gallionella ca...
Q3J6Y4         22 VAVKAHLIAAFLVFLLMMLAGATLRAAQ--------------G--N--------MapIGA-----DVFYQFMTVHGAGMI 72  Nitrosococcus ...
WP_013031504   22 VAVKTHLIVGILVFLLMMLAGAVMRAAQ--------------G--N--------MftISP-----DLFYQFMTVHGAGMV 72  Nitrosococcus ...
4GP8_A         84 IVFTQLFaQAIMVYLPARELNMRP--NMGL---MWLSWW----MAFIGLVV-AALPLLA---------NEATVLWTFYPP 144 Thermus thermo...
Q97XY4        126 VWIALTW-IAFSIFALPYL-------GVPLsrkLSFAILgltlFAGVGLLLgILLSY-NelipspywfIFGAQGRPNDAD 196 Saccharolobus ...
CBL43845      356 VWFFVCW-VGYTIFFLPRL-SKLPssQRTM---INSLFAmiviVGLGTLIGvYLSTM-Gfldg-wvayWFGTMGW-EFME 427
14_pfamImport  57 IWVAIGW-LVGGLLIAPIV-AGKDlrFPRL---VDLLWTalivVGVGGLVGiYMGAQ-Gymrd--twfWLGNEGR-ELLN 127
WP_006929350  332 LWVAVGW-LVGGLLIAPWV-ANKDhkFPWL---VDVLWAalvvVAVGGIIGlYMGAT-Gqmrd--vwfWFGNEGR-ELIN 402 Caldithrix abyssi
WP_015262022   59 FWPVIGM-LGMVYYFTAEQ-LKTDihSPKL---ARWQFAillvTSLGLLGSlALGIG---------------NGR-EYLD 117 Desulfitobacte...
Q24YD8         59 FWPVIGM-MGMVYYYTVEQ-LKADiySPKL---ARWQFLillmASAGLLGTlALGIG---------------NGR-EYLD 117 Desulfitobacte...
WP_013294400   65 AIAGLGG-SAVMWHFLSKYV--------NL---RAGLAWanlgFFLAGVVL-VLGGIFL---------GGFAAAWTFLYP 122 Gallionella ca...
Q3J6Y4         73 GIAAIAG-MAVLWYFLRQYV--------PL---STKIFWinfgIFLTGVVI-ILGSVFL---------GKYGGAWTFLYP 130 Nitrosococcus ...
WP_013031504   73 GTAGIAS-TGVLWYFLRQYV--------QL---STKIFWinfgIFLTGVVL-ILGSIFL---------GKYGGAWTFLYP 130 Nitrosococcus ...
4GP8_A        145 LK----------GHWAFYLGASVFVLSTWV-SIYIVLDLWRR-----WKAANPGK---------VTPLVTYMAVVFWLMW 199 Thermus thermo...
Q97XY4        197 ------------QGTFWLL---------LVaLILLLASSLFFkasksTAEPlr----------pLTRIT---AIGLLGSG 242 Saccharolobus ...
CBL43845      428 ------------MGRFFQLFLLVT----FSfWIYIIYRGVKNwltrkNIWS-------------VPAWL---LYGSGIMV 475
14_pfamImport 128 ------------LARVWDIGLVIG----LVlWFGMVYSTIRNakg----------------nklLIGTI---IWSAFGIA 172
WP_006929350  403 ------------LGRFWDIGLVVG----LVfWFLLVISLIRKaat----------------nnpLVSTI---IWSAFAIA 447 Caldithrix abyssi
WP_015262022  118 ------------GLPIFYAGISLG----ILiGAYNLVRTLWEnrqrlTP-----------------------ATGIMTVG 158 Desulfitobacte...
Q24YD8        118 ------------GLPVFYLGISLG----LLlGAYNLIRTLWQnkqkiTP-----------------------AAGIMAVG 158 Desulfitobacte...
WP_013294400  123 LPsnsmgmwsqaAAASYMGGVLLVGVGMLL-FYLETARGIIQkygnfTKSLGWHYlkng---qdapPVTVIASTVVTIIN 198 Gallionella ca...
Q3J6Y4        131 LPgismgawstgAAAAFLLGLLIIGTGFLI-LLLDFGRAILSsygsfGRALGLPQlfgkeplnpYHPATVVAGTMVLIVD 209 Nitrosococcus ...
WP_013031504  131 LPgislgawsagAAAAFLLGLLVIGTGFLI-LYLDVGRAILArygsfGRALGLPQlfgkepvdtSHPPTVVAGTMVLIVN 209 Nitrosococcus ...
4GP8_A        200 FLASLGLVLEAV--LFLlpwsfgL--VEG---VdPLVARTLFWWFGHPIV-YFWLLPAYAIIYTILPKQAG--GKLVSDP 269 Thermus thermo...
Q97XY4        243 IGAIFGSLPIIApwPNF------------------TEDQFFLWIMIHSFVeGFWPSIVIPVVLILLVVN-NlvPPSLATM 303 Saccharolobus ...
CBL43845      476 LFLFFGVLILED--QNF------------------AIADYWRWMVVHMWVeVTFEVFTTVIVGYLLVQM-GlvTRLMAER 534
14_pfamImport 173 TLYLAGMYPLHKiaPNY------------------TVDDYYRWWVVHLWVeLTFELFAAGVIAYLSVAL-GlvREKTAEK 233
WP_006929350  448 TLYMAGMMPLHKimPNF------------------TVDDYYRWWVIHLWVeLTFELFAAGSLAFFTVSL-GlvSHKVAVK 508 Caldithrix abyssi
WP_015262022  159 VVLLCVLLIPNI--LHY---------------SnPVADEAVKFWVVHLWEeMAFELTTSGFIASFFVST-GiaDKKDIEK 220 Desulfitobacte...
Q24YD8        159 AVFLCVLIIPNV--LRF---------------TnPVADEAVKFWVVHLWEeMAFELTTSGFIASFFVTA-GiaEKRDIEK 220 Desulfitobacte...
WP_013294400  199 IVAILIGAVILS--MML------InlYVPeivIsALLAKNLIFIFGHTFI-NSAIYMAVIALYEILPIYTG--RPWKLYK 267 Gallionella ca...
Q3J6Y4        210 FIGIAAGAVVLV--MML------VnlYNPefkPdPLLVKNLIYFFGHVII-NVAIYSAVVAIYELLPRYTG--RPYKTSK 278 Nitrosococcus ...
WP_013031504  210 FLGIAAGAVVLV--MML------VnlYNPefkPdALLIKNLIYFFGHVFI-NATIYASVTAVYELLPRYTG--RPWKTSK 278 Nitrosococcus ...
4GP8_A        270 MARLAFLLFLLLSTPVGFHHQFADpGIdpTWKMIHSVLTLFVAVPSLMtaftvaasle---fagrlrggrGLFGWIRALP 346 Thermus thermo...
Q97XY4        304 AASIDSASEILSGMIGTAHHYYFG-GEpvFWMYLGASAAILEVVPILFltyyafllwrr--------------------- 361 Saccharolobus ...
CBL43845      535 TIFLAVMLFLITAVIGISHNFYWI-AKptGIIALGSIFSTLQVLPMLLltldawkmrqelgrahdlrqqgRQVH------ 607
14_pfamImport 234 VMLLELGLIMFSGTLGVGHHYWWQ-GLdeYWIAIGGIFSALEPLPLALlmieaikeqn------------------hiks 294
WP_006929350  509 TMLFELALITMSGTLGVGHHYWWQ-GLdqYWIAIGGIFSALEPLPLALlmieawkqqr------------------elsa 569 Caldithrix abyssi
WP_015262022  221 WLYLEATLSVTGGLFGTGHHYFWI-GFpsIWLFLGSFFSVIQAIPVLLlaymiykgf--------------------knh 279 Desulfitobacte...
Q24YD8        221 WLYLEATLSVIGGLFGTGHHYFWI-GFppVWLFLGTFFSLIQVLPVFLlaylvykgf--------------------kkh 279 Desulfitobacte...
WP_013294400  268 PFVLAWSATIIMVLTVYPHHMLMDfAQpvWMHIMGQIISYASSLPVLAi---------------------TLTGTLGAVY 326 Gallionella ca...
Q3J6Y4        279 VFYAAWFAIVFMVMSVYPHHLYMDfPMpkWAMIGAQILSYGSGLPVMVv---------------------TGYGALMLVY 337 Nitrosococcus ...
WP_013031504  279 VFYAAWLAIVFMVMAVYPHHLMMDfAMppWALIVGQVLSYGSGVPVMVv---------------------TGYGALMIVY 337 Nitrosococcus ...
4GP8_A        347 WDNPAF-VAPVLGLLG----F-IPGGAGGIVN------ASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLL--- 411 Thermus thermo...
Q97XY4        362 ---geaktefqktLVAttliSaIGGGFVGAIIggasilNAPIINYYVHGLQFTMAHAHLAFPLVWGLTAILMWIAALyls 438 Saccharolobus ...
CBL43845      608 -----VmEGVWLFILGvnfwNiVGAGVLGSLI------NLPIVNYYEHATYLTPNHAHAAMFGVKGNIAIAGMLFCL--- 673
14_pfamImport 295 erknfDfGIPFMWLAGsaflNwFGAGFLGMVI------NTPTISYYSHGTYLIMPHAHVALLGAFGYISIAFIYMTA--- 365
WP_006929350  570 sesgfAfNTVFMWLAGsaflNwIGAGFLGMVI------NTPTINYYSHGTYLIMPHGHVALLGAFGYISLAFIYMTA--- 640 Caldithrix abyssi
WP_015262022  280 kvlslKeKLAMWLILSsifhHlTGATLLGLLM------TIPWVNLYTHGTYITSGHAHLALFGTIGFLILAGAYTIL--- 350 Desulfitobacte...
Q24YD8        280 kpfslReKLAVGLILSsifhHlTGATLLGILI------TIPWINVYAHGTYITSGHAHLALFGTIGFLVLAGAYTIL--- 350 Desulfitobacte...
WP_013294400  327 RSNIKW-DMTSSLLVLsifgW-SAGVIPAVID------GTIAFNHVMHNTMWVPGHFHLYLLLGCVTMILAFISWIAk-- 396 Gallionella ca...
Q3J6Y4        338 RSGIRW-NTSAKLLMLsifgW-AAGGIPAVVD------SMVSFNRVLHNTMWVPGHFHFYLLLGVLPMIFGFTFYLLnga 409 Nitrosococcus ...
WP_013031504  338 RSGIQW-NTTTKLLFLsmfgW-AAGVIPAIID------AMVTVNRVFHNTLWVPGHFHFYLLLGLLPMIFGFAYHLLg-- 407 Nitrosococcus ...
4GP8_A        412 -PNLT-GkpiSdaqRRL-G-------------LAVVWLWF---LGMMIMAV-GLHWAGLL-NVP--------RRAYiaqv 462 Thermus thermo...
Q97XY4        439 ngik---------------------enelktlRIMILIYA---IGFILQGI-DLWALGAVqLATvlrvgywaAKGTlfy- 492 Saccharolobus ...
CBL43845      674 ---------------QHmFhksaw---setriKGIFWSLQ---IGLVLMMVlDMFPVGLYqVWLtlqdglwhARSSevi- 731
14_pfamImport 366 ----------R---TNSlAkglew---netmsKWAFWLIT---IGVIVYVL-PTMIIGIEqTSTahtfgyfaARSRel-- 423
WP_006929350  641 ----------R---TNSlAnnlew---ndtltKWGFWLLT---IGVLLFAI-PTIVIGFHqAEIahdfgyyyARLRea-- 698 Caldithrix abyssi
WP_015262022  351 ------------------SdrdnptpktyrygVMGIILLN---FGLIGMSS-CLLIAGFLqTYL--------WRVL---- 396 Desulfitobacte...
Q24YD8        351 ------------------SekepldkkaygygLSGVILLN---LGLIGMSS-SLILAGFLqTYL--------WRVM---- 396 Desulfitobacte...
WP_013294400  397 nEKPAaG---F---SGF-E-------------KTMLWTFAgsaFAFTMVFL----MSGEA-SVP--------RRMA---- 439 Gallionella ca...
Q3J6Y4        410 nGAQEeK---P---PLT-E-------------RLGFYSFVggaLLFVGGFL----ASGAS-GIP--------RRWA---- 452 Nitrosococcus ...
WP_013031504  408 -EAKEgG---T---TMA-D-------------RLGFYSFLgggLLLAFTFL----ASGAS-SIP--------RRWA---- 449 Nitrosococcus ...
4GP8_A        463 pdAYP-Ha----aVPMVFNVLAGI 481 Thermus thermophilus HB8
Q97XY4        493 ----------lqpILNLIVWLRIV 506 Saccharolobus solfataricus
CBL43845      732 ----------lgpVFASFTYLRVI 745
14_pfamImport 424 -----------leAMSGWMWFRIL 436
WP_006929350  699 -----------vePLKGWLWIRII 711 Caldithrix abyssi
WP_015262022  397 ----GlDfmavssILSPYLILRAL 416 Desulfitobacterium dichloroeliminans
Q24YD8        397 ----GiDfmavnsVINPYLILRVL 416 Desulfitobacterium hafniense Y51
WP_013294400  440 --VHl-------pEWVWYSQVASL 454 Gallionella capsiferriformans
Q3J6Y4        453 --VHl-------eEWVPYAQWSTL 467 Nitrosococcus oceani ATCC 19707
WP_013031504  450 --VHm-------dEWIPMAHWGTL 464 Nitrosococcus halophilus
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