1YTY,2JVR,2O3D,5VSU,4WIK,5VSU,5VSU,6EZ7,5D77,3ZZZ,5Z58,2U1A,2MZQ,2MXY,3VAH,2MJN,2MB0,6N7P,3SXL,3SXL,2MJN,2X1A,2MY3,1P1T,1WI8,2KG0


Conserved Protein Domain Family
RRM_1

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pfam00076: RRM_1 
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RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C-terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Statistics
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PSSM-Id: 425453
Aligned: 68 rows
Threshold Bit Score: 43.761
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YTY_A 113 VYIKGFPTDATLDDIKEWLEDKGQVLNIQXRR--TLHKAFKGSIFVVFDSIESAKKFVE-TPG-QKYKETDLL 181 human
4WIK_B   9 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVd--DRGRSTGKGIVEFASKPAARKAFErCSE-GVFLLTTTP 78  human
Q04047 378 LRVSNLTPFVSNELLYKSFEIFGPIERASITVd--DRGKHMGEGIVEFAKKSSASACLRmCNE-KCFFLTASL 447 fruit fly
P08965 197 LFVTNLPRIVPYATLLELFSKLGDVKGIDTSSl-----STDGICIVAFFDIRQAIQAAKsLRSqRFFNDRLLY 264 Schizosaccharomyces pombe 972h-
P32605 229 LLIQNLPSGTTEQLLSQILGNEALV-EIRLVSv-------RNLAFVEYETVADATKIKNqLGS-TYKLQNNDV 292 Saccharomyces cerevisiae S288C
5Z58_p 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPg------RHDIAFVEFENDGQAGAARDaLQGfKITPSHAMK 219 human
2U1A_A  16 LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPg------RHDIAFVEFDNEVQAGAARDaLQG-FKITQNNAM 81  human
Q01617 444 LFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVtsKNGKTASPVGFVTFHTRAGAEAAKQdLQGvRFDPDMPQT 516 fruit fly
P37838  28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKd--TNKRSRGFGFVSFAVEDDTKEALAkARK-TKFNGHILR 97  Saccharomyces cerevisiae S288C
P37838 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVId-KSTGLAKGTAFVAFKDQYTYNECIKnAPA-AGSTSLLIG 362 Saccharomyces cerevisiae S288C
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