5DT6,3QXM,7LEP


Conserved Protein Domain Family
Lig_chan

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pfam00060: Lig_chan (This model is not part of the current CDD release)
Ligand-gated ion channel
This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
Statistics
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PSSM-Id: 513110
Aligned: 43 rows
Threshold Bit Score: 148.292
Created: 12-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DT6_A   1 GSYDRNHTYIVSSLLEEPYLSLKQYTYGESLVgndrfegyckdladmlaaqlgikyeirlvqdgnyGAENQYAPGGWDGM 80   fruit fly
Q19693 134 SWEVWVITAAVILISGVIFLVMTNIIRKVYEE----------------------------------MTVTPFESIWVFFS 179  Caenorhabditis elegans
Q9W365 518 RLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNnrqay-------------------------pyacREFTLRESFWFALT 572  fruit fly
Q9VDH6 574 TVETWFCLMGIILLTAPTLYAINRLAPLKEMRi--------------------------------vGLSTVKSCFWYIFG 621  fruit fly
O04660 574 TLALWLISLLSFFIIGLVVWVLEHRVNPDFDGp---------------------------------GQYQLSTIFWFSFS 620  thale cress
Q9SHV1 580 SIELWLTTLVFFFLVGISVWTLEHRVNSDFRGp---------------------------------ANYQASTIFWFAFS 626  thale cress
Q9SDQ4 578 TSRLWCVVLVSFLVIAVVIWILEHRINEDFRGp---------------------------------PRRQLSTMLLFSFS 624  thale cress
Q7XJL2 591 TLPMWAVTASFFVIVGAAIWILEHRINDEFRGp---------------------------------PRRQIITILWFTFS 637  thale cress
Q8GXJ4 613 TIEMWAVTGGFFLFVGAMVWILEHRFNQEFRGp---------------------------------PRRQLITIFWFSFS 659  thale cress
Q9M8W7 540 EKSLWLASGAFFVLTGIVVWLVERSVNPEFQGs---------------------------------WGQQLSMMLWFGFS 586  thale cress
5DT6_A  81 VGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKGTPIKTPEDLTMQ--TD-VNYGTLLYGSTWEFFRRSQ 157  fruit fly
Q19693 180 IFVQQGLPEQPRSWSCRVLVALWWLASITLSATFTGSLVALFAVDKTNVPFQNIDQlvRLvKQGKFEIVMDENSFTRTEM 259  Caenorhabditis elegans
Q9W365 573 SFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQ--LA-RQSRINYTVVKDSDTHQYF 649  fruit fly
Q9VDH6 622 ALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQ--LE-DHKDIVQYGLRNGTFFERY 698  fruit fly
O04660 621 IMVFA-PRERVLSFWARVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNINS--LLaKGESVGYQSSFILGRLRDS 697  thale cress
Q9SHV1 627 TMVFA-PRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITSMSS--LLhRGETVGYQRTSFILGKLNE 703  thale cress
Q9SDQ4 625 TLFKR-NQEDTISNLARLVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDS--LRaSEVPIGYQAGTFTLEYLTY 701  thale cress
Q7XJL2 638 TMFFS-HRETTVSTLGRMVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIKGVDT--LI-SSTGRIGFQVGSFAENYMT 713  thale cress
Q8GXJ4 660 TMFFS-HRENTVSSLGRFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDS--LVtSNEPIGVQDGTFARNYLIN 736  thale cress
Q9M8W7 587 TIVFA-HREKLQKMSSRFLVIVWVFVVLILTSSYSANLTSTKTISRMQ----------------LNHQMVFGGSTTSMTA 649  thale cress
5DT6_A 158 IGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYALLVESPKNEy-------------------------------vN 206  fruit fly
Q19693 260 IARSKLPVYRDLWHEMIVNHKVKYVNGIARGVAFVRANPGYALLGPmatl--------------------------nfyA 313  Caenorhabditis elegans
Q9W365 650 VNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAInssqpvadakegfanvdahenadyafihdsaeiK 729  fruit fly
Q9VDH6 699 VQSTTREDFKHYLERAKIYGSAQEEDIEAVKRGERINIDWRINLQLi--------------------------------V 746  fruit fly
O04660 698 GFSEASLVSYGSPEHCDALLSKGQAEGGVSAVLMEVPYVRIF-------------------------------------- 739  thale cress
Q9SHV1 704 TGFPQSSLVPFDTAEECDELLKKGPKNGGVAAAFLGTPYVRLF------------------------------------- 746  thale cress
Q9SDQ4 702 SLGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIE------------------------------------- 744  thale cress
Q7XJL2 714 DELNIASSRLVPLASPEEYANALQNGTVAAIVDERPYIDL---------------------------------------- 753  thale cress
Q8GXJ4 737 ELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDELPYIEVL------------------------------------ 780  thale cress
Q9M8W7 650 KLGSINAVEAYAQLLRDGTLNHVINEIPYLSILIGNYPN----------------------------------------- 688  thale cress
5DT6_A 207 ARPPCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKTECN 267  fruit fly
Q19693 314 YSDCKVILFNDGILPVYLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKI 374  Caenorhabditis elegans
Q9W365 730 YEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNL 790  fruit fly
Q9VDH6 747 QRHFEREKECHFALGRESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIERWHQMNLPS 807  fruit fly
O04660 740 --LGQYCNKYKMVQTPFKVDGLGFVFPIGSPLVADISRAILKVEESNKANQLENAWFKPID 798  thale cress
Q9SHV1 747 --LGQYCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAESPKAVELEHAWFKKKE 805  thale cress
Q9SDQ4 745 --LFLAERTGFKIVGEPFMHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKT 803  thale cress
Q7XJL2 754 -----FLSDYCKFAIRGQEFTRCGWGFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLS 809  thale cress
Q8GXJ4 781 -LTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHE 840  thale cress
Q9M8W7 689 ------DFVMTDRVTNTNGFGFMFQKGSDLVPKVSREIAKLRSLGMLKDMEKKWFQKLDSL 743  thale cress
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