Conserved Protein Domain Family
RanBD

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smart00160: RanBD 
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Ran-binding domain
Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Statistics
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PSSM-Id: 197549
View PSSM: smart00160
Aligned: 10 rows
Threshold Bit Score: 144.838
Threshold Setting Gi: 19112834
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

smart00160 is a member of the superfamily cl17171.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1K5D_B         27 FEPIVSLPE-QEIKTLEEDEEELFKMRAKLFRFAseNDLPEWKERGTGDVKLLKHKEK--GAIRLLMR-RDKTLKICANH 102
gi 297266733 2911 FEPIVSLPE-VEVKSGEEDEEILFKERAKLYRWD--RDVSQWKERGVGDIKILWHTMK--NYYRILMR-RDQVFKVCANH 2984
gi 62088546  2224 FEPVVPLPDlVEVSSGEENEQVVFSHRAKLYRYD--KDVGQWKERGIGDIKILQNYDN--KQVRIVMR-RDQVLKLCANH 2298
gi 17553754   255 FKPVIPLPDlVEVKTGEEGEQTMFCNRSKLYIYA--NETKEWKERGTGELKVLYNKDK--KSWRVVMR-RDQVLKVCANF 329
gi 17553754   726 FKPVIPLPDlVEVKTGEEDEEVMFSARCKLYKYY--SDLKENKERGLGDIKLLKSNDN---KYRIVMR-REQVHKLCANF 799
gi 332262736  104 FEPIVSLPE-QEIKTLEEDEEELFKMRAKLFRFAseNDLPEWKERGTGDVKLLKHKEK--GAIRLLMR-RDKTLKICANH 179
gi 6323367    588 DATPEESKP-INLQNGEEDEVALFSQKAKLMTFN--AETKSYDSRGVGEMKLLKKKDDp-SKVRLLCR-SDGMGNVLLNA 662
gi 323308682   75 PKPL-KLQK-QEVKSGEESEECIYQVNAKLYQLS--NIKEGWKERGVGIIKINKSKDDv-EKTRIVMR-SRGILKVILNI 148
gi 19112834   257 KSTMHQLSD-SEIITGEEEEESIFSVRARLYVVA--DEKKTWKERGQGILKVNVPKQRgsGSGRLLMR-NDAVHRVIMNV 332
gi 17535607   134 EKQHAGTSS-VEITTGEENDTNIFQAPCKIWAFD--KLKNAYSEKGVCNLRINKRVENglTHHRIVARtSSGTLRVIINS 210
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1K5D_B        103 YITPMMELKPNA-------GS-DRAWVWnTHADFADECPKPELLAIRFLNAENAQ--KFKTKFEEC 158
gi 297266733 2985 VITKTMELKPLN-------VS-NNALVW-TASDYADGEAKVEQLAVRFKTKEVAD--CFKKTFEEC 3039
gi 62088546  2299 RITPDMTLQNMK-------GT-ERVWLW-TACDFADGERKVEHLAVRFKLQDVAD--SFKKIFDEA 2353
gi 17553754   330 PILGSMTIQQMK-------SN-EKAYTW-FCEDFSEDQPAHVKLSARFANVDIAG--EFKTLFEKA 384
gi 17553754   800 RIEKSMKLSPKP-------NL-PNVLTF-MCQDFSEDASNADPAIFTAKFKDEATagAFKTAVQDA 856
gi 332262736  180 YITPMMELKPNA-------GS-DRAWVWnTHADFADECPKPELLAIRFLNAENAQ--KFKTKFEEC 235
gi 6323367    663 TVVDSFKYEPLA-------PG-NDNLIK-APTVAADG--KLVTYIVKFKQKEEGR--SFTKAIEDA 715
gi 323308682  149 QLVKGFTVQKGF-------TGsLQSEKF-IRLLAVDDNGDPAQYAIKTGKKETTD--ELYNIIvks 204
gi 19112834   333 PLFQGMSKKSLQiasassgGS-ANYLKI-FVIENGKS----VLYAVRVKDNSLAE--QLRNHVLEA 390
gi 17535607   211 KIFSDMLLERVD-------KR-IRISAM-GPEISGVQIFLLKIGFTKTETIPDSD--IFYNIMSDL 265
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