2DHA,1X4F


Conserved Protein Domain Family
RRM_6

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pfam14259: RRM_6 (this model, PSSM-Id:290958 is obsolete)
Click on image for an interactive view with Cn3D
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
Statistics
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PSSM-Id: 290958
View PSSM: pfam14259
Aligned: 74 rows
Threshold Bit Score: 34.1217
Threshold Setting Gi: 74583154
Created: 23-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DHA_A        26 VRMRGLPFTATAEE-VVAFFGQHC-PITGGKEGilfvt--ypdgRPTGD---AFVLFACEEYAQN---ALRKHKDLL-GK 94
gi 74583154   73 IILQGLTPEILEEH-IELALYATG-AKVSTVTLirek----etqKSRCF---AFAKFVSLQDSKDw-mEANFPTLVI-DG 141
gi 75008096  389 LFISNLTEAITDED-IKEEFTKAGfELDGYYRK------------NPSV---AIVSLRDIETAVQ---ALILVHSQQlKE 449
gi 82258961    4 LYIGNLGDSVTAED-LGKTFDEHKiPYTGQFLM------------KTGY---AFVDCPDDQWAMKa-iETFSGKVEL-KG 65
gi 74951801  106 IYIGNIPP-VGDIEiLMDIINQALiSVNGTSMPgnpc----lkgWISSDghyAFIELRTMEEASN---CMQLTGLNI-MG 176
gi 156837036  32 VYIGNINPRSKAED-ICNVV-RGG-TLQQIKFF-----------KEKGI---CFVTFIEAASAAQfyaNSFIDPIIL-HN 93
gi 156086444  27 IYIGNIPPQADVNN-LLEFLNDALtAVNGTSIPgnpc----qkgWISADshyAFVEMRTMEEASN---CIQLSGINY-MN 97
gi 254581028  94 AIINNIPWDITPEG-VQAWVE-DGlHKEDAVEEvdlprsikdptRLKGI---AFVTLKGREDLVQ---TLTFNGTPL-ND 164
gi 671415642 132 IVMKMLPTDSQRDA-LMALTARQGfRVKDIRIIhk--------gPDRCF---GFVEFGDVNSAQAw-mEYNKGTLLLdDG 198
gi 268567794 243 LAIMNMPNDVDNTK-ITLSLGKCGyLPQDVRTMtkfd---knskQIRTF---AFVEFSNLETAEQw-mADYQGWLTLdDG 314

                 ....
2DHA_A        95 RYIE 98
gi 74583154  142 IDVS 145
gi 75008096  450 RFLR 453
gi 82258961   66 KRIE 69
gi 74951801  177 HNIK 180
gi 156837036  94 NTLR 97
gi 156086444  98 YSLR 101
gi 254581028 165 RTVY 168
gi 671415642 199 RPVK 202
gi 268567794 315 RTLA 318
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