Conserved Protein Domain Family
Sigma_reg_N

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pfam13800: Sigma_reg_N 
Sigma factor regulator N-terminal
This domain is found near the N-terminus of a sigma factor regulator. The N-terminus is responsible for interaction with the sigma factor.
Statistics
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PSSM-Id: 316331
View PSSM: pfam13800
Aligned: 25 rows
Threshold Bit Score: 51.8262
Threshold Setting Gi: 496463073
Created: 28-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5KZ74        56 KMMKKAQQKFFFRNTLLVVSFILTIVPLLtM-FTFVYYgwgrDHNRGNELIETIQTVSEMMSPNVYVDYDTVDVEI---K 131 Geobacillus kau...
Q8ERK5        11 KILKKYRFTLQFRVLRIILAVIFIYILYMtV-INIAAD----RLHITNKNMYFSMLALEWTTPNST--GSVTNQSE---M 80  Oceanobacillus ...
Q3AAZ5        20 AFLRKARFISILRITLISLGVAIGIFVLS-F-VIPEIM----LQNQENRIDSIYPELIKFSEPNTFVLSGESYNVR---L 90  Carboxydothermu...
Q8R9P7        18 AFLRKARFKSILRIIIISLIIAIGVFVLT-I-IISEMM----LQNQENRINSFYPDIVKFTEPNTFAISGESYNVR---L 88  Caldanaerobacte...
WP_013823851  33 RFLRRVQWRSALRTILIALGVTVVSFVLL-F-VWTRHL----LNEQGNRIDSFYPDLIRYSTPNTIAVRGSWQDVG---W 103 Desulfotomaculu...
WP_009792622  11 KILTKYRFALTFRVVKVLIAALFIFWIYM-LaVTISYD----SLHLDRKHIFYTQLAMDWTQPNIHKDFGGFAQSEitpF 85  Bacillus
WP_006716838  17 AAMQKGKKKSTLKIILISVLIALLVFAIL-L-VGNAAL----MIKKSNEMNSYLEYDVQFTVPNGYI-SESSDTMG---F 86  Desulfitobacter...
WP_064201525  72 AIVRRGKWKNRLSNAGFTIGLPFLAGVVL-L-ILNGWV----GSLMHEDLFRVAKSMVNFTQPGVRV-GGSGSQVG---L 141 Brevibacillus b...
WP_014968048  30 KAIKNAKRFSTLKIVFISFFTFVVLSFLS-I-SIGEKV----IYKKWNNYISNVENTFLIQYPNSFP-GTFYTYKG---F 99  Clostridium aci...
WP_014757217  28 KAIKKAKWRSILRTTIISLIVILIVSIST-V-FIGIKV----TQSESSDISFALSVFNDISAPDMYI-GKSIRYEG---I 97  Thermoanaerobac...
Q5KZ74       132 p--FTMTVTADKYKWMDDKKI 150 Geobacillus kaustophilus
Q8ERK5        81 tifGTNKITYPISKRIGTEQQ 101 Oceanobacillus iheyensis
Q3AAZ5        91 ---FGRQKKYYLLRLIGNKPY 108 Carboxydothermus hydrogenoformans Z-2901
Q8R9P7        89 ---FGRQKEYYLLRLIGNKPY 106 Caldanaerobacter subterraneus subsp. tengcongensis
WP_013823851 104 ---LGQQREYLLVRMVGDRPV 121 Desulfotomaculum kuznetsovii
WP_009792622  86 ---FTQKISYPVTRRVGKEEQ 103 Bacillus
WP_006716838  87 ---LGGISNYTISRLVGDKPV 104 Desulfitobacterium metallireducens
WP_064201525 142 ---LYGNISMELSERVGGEEk 159 Brevibacillus brevis
WP_014968048 100 ---FSRETEYKTFKLINGKRV 117 Clostridium acidurici
WP_014757217  98 ---FGGKTVYSTYKIIEGKVV 115 Thermoanaerobacterium aotearoense
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