Conserved Protein Domain Family
TraF_2

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pfam13729: TraF_2 
F plasmid transfer operon, TraF, protein
Statistics
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PSSM-Id: 338922
View PSSM: pfam13729
Aligned: 38 rows
Threshold Bit Score: 125.508
Threshold Setting Gi: 889324466
Created: 12-Apr-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q47VN4        59 SNPALLT-----KFRN-DN----DVFv-SL--NIGI--MASDKYNVIDTAEDISND--------------LD-------- 101 Colwellia psych...
Q21KU5        45 HNPAMNNf----MVHEeETy---RFNf-GPafSYGI--ELGDVGNFADDLDDLIDI--------------IDdpds---- 96  Saccharophagus ...
WP_016389362  50 GNPAAQAydrsrMDQD-DG----VIGg-LHl-GAGL--EYGNVSELFDKVDDIADSllsdsglaekniynID-------- 112 Simiduia agariv...
WP_013660164  46 YNPAAPFl----MVNN-KDgdrfRMGl-FGpmAFGY--EFGQVDSLEEKIDELDET--------------LD-------- 95  Marinomonas med...
ABM62828      55 GNPAALGl----QRQR-F-----QAGi-Ha--GLAA--ELGPVDQLIDELDDLQDR--------------LD-------- 97  Halorhodospira ...
WP_019602749  46 tNPAHIGl----AIRE-QE----NVRfnFLp-ALSVytEVGAVDNFVDDLDELIDI--------------LD-------- 93  Teredinibacter ...
ADU67124      68 QNPAAGAa----ALEK-KGgq-yRFGi-LSsiGFGY--EFGDVDNLL-----DELD--------------DL-------- 111 Desulfurispiril...
WP_011813609  46 QNPAGPIa----ASDR-GV----RMGv-FAl-GLSY--ELGDVADFSDDFEALGEE--------------LEdlerllee 98  Halorhodospira ...
WP_011814678  68 hpatlhtvagnpagaaaadrvgvQFGl-GSv-GVGY--ELGPVDGLVDE----IDD--------------II-------- 117 Halorhodospira ...
WP_048813936  53 GNPASSYl----MANLqGf----RVGf-LGpiGIGV--EGGGVNGINDRVDRLEAI--------------FDenfts-si 106 Marinomonas sp....
Q47VN4       102 --TLADDINGMS-----LQiiqspeqmknynddLNQQVDTIIA-------DFEKIDGQ-V-VKVRNGLN---LQIIIPN- 161 Colwellia psych...
Q21KU5        97 -----------------------------tdesPSDVLERFNS-------VLENMGEH-GyIKNTINVRapvLPLFYKS- 138 Saccharophagus ...
WP_016389362 113 --FNNPDLNGLV-----DA--------------IDQEADRVDD-------LLASIGDS-GyANATVNGQ---IPIVFAA- 159 Simiduia agariv...
WP_013660164  96 --KELETAE---------D--------------VDKALRDVNE-------LISSMDENaT-GKGMFSSQiplFPMIYRS- 141 Marinomonas med...
ABM62828      98 --DGLSPGDFEDsadfqAA--------------VEEEVERLQA-------FLEDAGRD-GyVKATGHAA---APVRMAL- 149 Halorhodospira ...
WP_019602749  94 ------DPSATD-----DS--------------VDEVLDRFNG-------LLVTMGEE-GyLTTKVGLSaplFPFYFRS- 139 Teredinibacter ...
ADU67124     112 --SDLLDDASTL-----QE--------------VEDIKERFDE-------ALVDMSRD-GyLKVQGGVHvplMPIVMTH- 161 Desulfurispiril...
WP_011813609  99 veSGDVDPDNAE-----DE--------------IESFQANVNE-------ILDRIGED-G--YLTAGVTgqfVPFPFETt 149 Halorhodospira ...
WP_011814678 118 --DILDRDDLGP-----SE--------------ADDLIERTEG-------VLAQLGQD-GwGKLQFGGRpplAPLVVGS- 167 Halorhodospira ...
WP_048813936 107 dvDAIKTEAQAI-----YDdqgqaaadafvvakIDEVLADINNsldsadvVISDISRT-TyAKFSTTVQgpfLPIIYKT- 179 Marinomonas sp....
Q47VN4       162 -QFLSFGLFTNQYSRIAGVMDY-----------NESDEEILNDAIL-------------------------SGDLDLKDL 204 Colwellia psych...
Q21KU5       139 -DRFGGTFSVDFSLDATIGARVlddelkydqdkDYLT------------------------------------------- 174 Saccharophagus ...
WP_016389362 160 -DVFGGTLGVEYRYAATASAVAlpe------llNFDTQAALTALQTafdpnnpqtsydltggvtlavdpltGDVAIGFDN 232 Simiduia agariv...
WP_013660164 142 -PQY-GAFMFDASLTGLVKGSFl---------aEEAEIQGKSIQT----------------------------------- 175 Marinomonas med...
ABM62828     150 -PWGEGGLSLSVRYSGQSRLGIld-------apLTADIEDET---------------------------------AELST 188 Halorhodospira ...
WP_019602749 140 -RPLDMVFSAELSFNGSVGMRVld-----------------dtLRF-------------------------DDQNNKFST 176 Teredinibacter ...
ADU67124     162 -SLWQGSITFDASYQGQARLGVld-------dpIAWDE-----------------------------------VRGEAVT 198 Desulfurispiril...
WP_011813609 150 qDALRGSLLIDLDYSLRGHISVlr----------gEDLDLSIDDQD-------------------------DAGDALDTL 194 Halorhodospira ...
WP_011814678 168 -ARSGWSVALDAEATGHLGFSIl-----------------dDELRF-------------------------VRETEQIQS 204 Halorhodospira ...
WP_048813936 180 -RRR-GVFMLDASASLVGRADVladnltltgvdELDAVTSTSELDg------------------------vDVSGAGIES 233 Marinomonas sp....
Q47VN4       205 K-STTSAIGYSVAEAGFMAGYPV--V--T-DtNYDL-SVGAKLKYQRIDLYYNRVQIS-D--------FDD-----DDfe 263 Colwellia psych...
Q21KU5       175 N-TAIYLKSGIEKRLSFGYGREL--WsyN-DmGK-L-YGGARLDISNMELSKQVMPLQ-M--------LDG-----RDis 234 Saccharophagus ...
WP_016389362 233 D-STLLTRAAKISEFGVSWSKGL--N--M-S-GGKL-FFGVTPKYTSMGLSNVASRVG-D--------ITD-----AEe- 289 Simiduia agariv...
WP_013660164 176 Q-SSVYVKDGADLNLSFGYSKDI--WanQ-Y-GM-L-VGGAKLHAHYLTLGKALLVLQeD--------DDI-----GDe- 234 Marinomonas med...
ABM62828     189 N-TSLYVKGAVLRELTLGYGQPV--W--SaG-GGRL-HAGASLTHYQSDLSKIVVPLQ-D--------TEDvgdtlSDe- 251 Halorhodospira ...
WP_019602749 177 N-TSAYVKSGLETKLAFGGSRAF--YnlL-D-GMDV-YAGAKLNIIQMELSKQVIALQ-Q--------MNG-----ESie 236 Teredinibacter ...
ADU67124     199 N-TSLYLKGAVIRQISLGYSRQV--WenH-F-G-TL-YAGARLKHYEGDFSKNVIALM-DadddvadvFEDe-------- 262 Desulfurispiril...
WP_011813609 195 DgFGGYVRSAVTRTFTLGYGSAV--Y--E-N-RQGLlFAGAQLKHHQVELSRMAVGFD-D--------DPG-----SQls 254 Halorhodospira ...
WP_011814678 205 N-TAAYLKGGGILRLSAAPSLRVaeW--E-G-GREL-FVGARVSHYQAELSKAVVALA-E--------DTN-----RDfg 264 Halorhodospira ...
WP_048813936 234 D-TSVYMKRASDLRFSLGYSEMV--SrsE-T-SA-L-IIGGRLNFHRLALDQKLTVLN-E--------DDD-----SSis 292 Marinomonas sp....
Q47VN4       264 ----itND---E----NITNKSGANIDLGLYVNWGEerqWHAALVTNNLIKQTVHHAE---------------------- 310 Colwellia psych...
Q21KU5       235 dvmtdeYD---K----NLVSTTAMSVDIGVVWDADF---YRLGLTLADINSPSFDYGAvgvncderepgsteqsacyate 304 Saccharophagus ...
WP_016389362 290 -----lFD---DirdaSFKTEGKIGLDAGLLWVAQN---YRLGVTGTNLLEPSFKFPAldtsgftn-------------- 344 Simiduia agariv...
WP_013660164 235 -----fSDsleD----NQESTFGVGLDVGAIWVAEN---YQLGLTATNLNEPEFDYGIigqncssltgtqidn---cvva 299 Marinomonas med...
ABM62828     252 ------YD---A----NQERDTAIGANAGVVWEADR---YQLGATARNLNKPRLDYPAvgegcdrldgeaqt-----rce 310 Halorhodospira ...
WP_019602749 237 dvvedaYD---E----NLKSSTNMSLDLGVSLVAES---FRLGATLSDINEPSFDYGAvgvncsdyeessisrsncdtat 306 Teredinibacter ...
ADU67124     263 ------FD---A----NQRTSSALGVDAGVLWVAHL---YRLGATVNNLNSPSLSYPAigtgcdslsgsaqd-----ncn 321 Desulfurispiril...
WP_011813609 255 ----deFR---E----NAETDSDLGVDLGVMWVSDR---YRAGASVANLIEPTFDYPAvedddtfda------------- 307 Halorhodospira ...
WP_011814678 265 divedeID---R----QQETSSAVGLDLGVMYQTRF---FRAGGAWKNINEPTFDFPAvgtdcsgeadpdlq----ancl 330 Halorhodospira ...
WP_048813936 293 y--sdfFL---S----RDSVSSGVSLDLGLILTGRN---FQLGASVANVNEPEFDYKGlvsdcagltgadkts---ceaa 357 Marinomonas sp....
Q47VN4       311 ----------QNLIFTLENSTSFGL--SY--QN--SWLNLATDID 339 Colwellia psychrerythraea 34H
Q21KU5       305 yfievkgdlkAYETHTKHARATVDG--ALhiGN--KWWLTSALdl 345 Saccharophagus degradans 2-40
WP_016389362 345 --paitaqlaALETYTLERQFTLEG--GLftAD--HQWSLNIAYD 383 Simiduia agarivorans
WP_013660164 300 aqfasrgeiaSSETHVMERQVTIDGavAL--SD--KQWTLATSYD 340 Marinomonas mediterranea
ABM62828     311 aaqdfagridLSETWTLDPQMTLEA--AAynED--RTWVLAGSLD 351 Halorhodospira halophila SL1
WP_019602749 307 yfvqeageivSQETYTRHALLTLDG--MYrlgsslflsgeletas 349 Teredinibacter turnerae
ADU67124     322 taayfsnrinLREKYEMEPQLQVEG--TLyhPN--RQWVVSASLD 362 Desulfurispirillum indicum S5
WP_011813609 308 --aaergeidRDESYRMERQLSVEG--AVhtDD--GRWLLGGSLD 346 Halorhodospira halophila
WP_011814678 331 taanfsdritREEAFRLNEQVTLEG--AL--HDpaQRLVLAASYD 371 Halorhodospira halophila
WP_048813936 358 irfagkgvfsLNETYKMEAQMTLDA--AIksKD--QHYSLAGSYD 398 Marinomonas sp. MWYL1
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