Conserved Protein Domain Family
TerB_N

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pfam13208: TerB_N 
TerB N-terminal domain
The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defense.
Statistics
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Aligned: 35 rows
Threshold Bit Score: 125.542
Threshold Setting Gi: 179350835
Created: 30-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Ccel_0962    614 SKNLPVTPKPEKREFIRDiqelnicvTSKHTGYiqsdyyEK--AYRFLERARSFEHykAD-SAKYVPFSCEW--PTYDSM 688  Ruminiclos...
Q74I06           160 LNFEDTQLVPKEIKRMIE----------SYQYSlpg-svRR--EQNFYLQGKLVASyeDH-YEGHQSFLRYY--PTYHDL 223  Lactobacil...
Q5FLS0           141 NNFKKKPLATDRIHQMQE----------LYDYSvlp-svGR--YKNFYNQGKFMADyeDD-YSDYAAFRRFY--PTYHDM 204  Lactobacil...
jgi:Sgly_0873     71 GPQSEPYATFKKMRQIGG---------VREGYLsy--yaDD--AEIFCKQAQLMKDftDD-DDRKIPLDPYC--ATYLKM 134  Syntrophob...
jgi:Clocel_0826  132 GEQESRQAIPARPSYEQE------------GFRisfsvdKQ--REKFFRDMKKYSSk-EGkKVLFVPFMTYW--PTYDSM 194  Clostridiu...
jgi:Nther_1525   123 FIKNEIERLSKDKQGDNH---------SQDNEIrvtvriEGlgDEKFVKDSLKYKSt-PGfETEFVPLYKYW--TTFESL 190  Natranaero...
Q24ZT3           645 ENTIQVSSVKGNLEFALSiet--sslNSYGGY-------YN--GGRFLQEAKQLVEhvEH-RAKFIPFMSYW--PTYSSM 710  Desulfitob...
jgi:Rumal_2152    43 DIVPPKDNTPAQLMEMRRmv-----ySPEAQWR------SR--EWLFGKQGSFMAYfeDD-FEKDVPFEHYF--PTYNDM 106  Ruminococc...
jgi:Acfer_0795    29 PRK-PPAPLPETLQQLRAme-----kDGESRYE------TT--PELFVRQGMAAAAyeDD-TVYDLPVLHYY--PTYRVL 91   Acidaminoc...
BAL95136         125 TVEVRGLVLPGLLSVALK----------PPPKGvvl-hpAT--VAAWMPADLGVPT------DGVEPIRDVWsiPSYASL 185  Rubrivivax...
jgi:Ccel_0962    689 SIHQREWYFWWREQVRMGlyLETDLSYVLVYIYELVNLVGVSdpiDGYEKLYTIWEIYrn-kyLKLDFHLLEWIMDYiII 767  Ruminiclos...
Q74I06           224 TVGQARTYFTWRTKIKQNiyEKISDSYAYIYLYELLNGIGIKdpeEGLDKLITFNKNYaqkfsPEMSAYLERWIRDYiIF 303  Lactobacil...
Q5FLS0           205 KIEQLRSYFAWRTQLRKGnyQKVSTSYAYVYIYELLNNIGVKsaqDGYQKLIDFKENYvekfdLSIEPYLNDWLKDYvLF 284  Lactobacil...
jgi:Sgly_0873    135 DDAQLRTYFTWRTKVRQGviEDTSLSYAFCYVFELLNDVGVSspaEAIGKLIALWTAFrr-ydEKIDVYLREWIRDYyVV 213  Syntrophob...
jgi:Clocel_0826  195 DGQQQAWYFYWRSQVREEnyIDTGLSYIFVYIYELLSGIGWTapqEGLVKLSSIWTRYre-rfSKLDRYMPDWIFDFtQL 273  Clostridiu...
jgi:Nther_1525   191 DENQKQWYFYWREQVVKGnfLDTDLSYIILFTYELINYTFNLnaaFNVSMMVQLYEAYkd-rvPKINNYLPTWIHDM--- 266  Natranaero...
Q24ZT3           711 SMEQQKWYFYWRGQVRKGsyPDTDLSYIFVHVYELINNVGVQnpqDGYQQLFNLWINYre-ryPKLDHYLVDWLTDYvAM 789  Desulfitob...
jgi:Rumal_2152   107 TLPQQRTYFSWRTCARRGeyKEISLSYIFVYAYELLNLIGVKtpqEGYDRLKALLDEYgd-sqPKLKRFLSIWLDDMvVY 185  Ruminococc...
jgi:Acfer_0795    92 TDQELRGYFGWRTRLRHQqlERTSLTYAFLYIYELLNQIGVEnpqDGYDKLKSFGDNYgm-ldDRILPYLHQWLRDYvLY 170  Acidaminoc...
BAL95136         186 TVAQRGLYLKWLASGRE---LSVPAHLALLFVCGLESRVVEAgptALADEERRAIA-------WASRDVVARFGSALpQL 255  Rubrivivax...
jgi:Ccel_0962    768 N--DCP-IDFIEILKDNISRCpyfhlPDFLIPYYTDeELSKMSTTLIARFIDYPLKkskfy----tgihQELLDKYIPRA 840  Ruminiclos...
Q74I06           304 Y--NIN-KTNNTFFVKEQTNDk----KYEQLLYPDQfSNHEV-AENLMKLSNYKISncpl-----ykksIEKFEYLLVLI 370  Lactobacil...
Q5FLS0           285 Y--ELD-QKLIEENFEDEIAQd---hDYIVLHDPESfSAKELAEVFARKTSYWNTSkti-------knnSEVFAKVLRCV 351  Lactobacil...
jgi:Sgly_0873    214 HkpQFA-VEFTDLSRGFPVPYhs-edV--ALLAKAKsCSWDD-LRVIEASSSFRITngqfy----katdQAMIEKCACFV 284  Syntrophob...
jgi:Clocel_0826  274 HklEYMsPVEKDYIHLMPSVV-----TDILIDRHSEeVPLKLSFSLIETLTDYAIVnskfy----kdgnQELIKEAIPRV 344  Clostridiu...
jgi:Nther_1525   267 ---LIE-LDEKELAQSWGTYTrrsrnPYEKF-YKTFkKHKD--DISKISMNQWNSIiqrynetkffknnKKKVYTTFKKA 339  Natranaero...
Q24ZT3           790 F--GCN-VDLLEVYQHLDHKNadpdyLNIILTGYKKsGIGRLSLELINQIADYSIFrskfy----nesgQTLLVEYIPKT 862  Desulfitob...
jgi:Rumal_2152   186 Y--GLD-ITLLKNGDILEFDN-----ALEVIRDADDhSVDEV-FTALNNVSSYNAErsaf-----ykayPEDFRTVAVRS 251  Ruminococc...
jgi:Acfer_0795   171 W--QLD-PKLLPETKRSRQDE-----AYLVLENYKNvSDQEL-FEALDLFSTYHISrsrl-----ykqqPEDTIRLLGRI 236  Acidaminoc...
BAL95136         256 R--EHC-LNLAGFLDAVDAPA-----RWYLLDVPELaETYDPSAPLQVALGQAARD-------------GAFLPPAWALA 314  Rubrivivax...
jgi:Ccel_0962    841 IAEVNFYLKDRFGK 854  Ruminiclostridium cellulolyticum H10
Q74I06           371 WHKILDLRNDGFDF 384  Lactobacillus johnsonii
Q5FLS0           352 WQELLLSKKYGIAY 365  Lactobacillus acidophilus
jgi:Sgly_0873    285 IQELAKLFKSGGVD 298  Syntrophobotulus glycolicus DSM 8271
jgi:Clocel_0826  345 IALVDVVLRKKKQK 358  Clostridium cellulovorans 743B
jgi:Nther_1525   340 LKLFQEENKEEGQD 353  Natranaerobius thermophilus JW/NM-WN-LF
Q24ZT3           863 IEKVNAFLLEKHHG 876  Desulfitobacterium hafniense Y51
jgi:Rumal_2152   252 FKAFSEYYGSHRKK 265  Ruminococcus albus 7 = DSM 20455
jgi:Acfer_0795   237 YRMIQAYWESHRKK 250  Acidaminococcus fermentans DSM 20731
BAL95136         315 SVLSDVRVPKKTPV 328  Rubrivivax gelatinosus IL144
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