Conserved Protein Domain Family
DNA_pol3_delta2

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pfam13177: DNA_pol3_delta2 
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Statistics
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Aligned: 44 rows
Threshold Bit Score: 141.191
Threshold Setting Gi: 268322498
Created: 30-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Ppha_0715                        8 GQKQQIRVLQNALETGRFAHAYLFTGPDGSGKESVAFEIASLLNCQNAAtdv-------hkgScgtcPDCLQIQSFMHPN 80  Pelodictyon phaeoclathratiforme BU-1...
Q6F0E2                               2 KKREALEKFVEQLKNKKMFSSILISNDNQETLNDFANNLSRTIFCENLGi------------EkdscDNCKRFENKSLSN 69  Mesoplasma florum...
jgi:Sterm_3651                       7 KDTFLIDRLINEAAKDKESASYLFYGDKRVDLLFYALEFSKLFLCENFKdn----------dYcgvcNVCKSVDNYSYPD 76  Sebaldella termitidis ATCC 33386...
CAX37233                             2 INENLSKVLENSIKNNKLQQVYLLFSRANQDIDLDILEFVRLVNDEKQIsw----------------------hqCLQKE 59  Mycoplasma hominis ATCC 23114...
BAH70031                             3 vsKNVITILENSIKNNKLSHCYLLKAPSGLNIDDSILYMINKLCNSQLQs---------------------lDLETMLPN 61  Mycoplasma fermentans PG18...
WGS:AAXU:1101174000280_ALPR1_05180   8 GLPETKKNLISAVKNNHLAHALLFHGPEGSANLPMALALSTYLFCQNPGee----------dAcgecSYCKRMEKLIVPD 77  Algoriphagus machipongonensis...
BAI65570                             9 IPADKLQQLRTDAAADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDpq---------nrGcgqcKGCVTVMNGSHAD 79  Rothia mucilaginosa DY-18...
Q482J4                               4 ICHEKQVQLSRQYQQDTLAHAIIIQGIEGAGQGALAKWLIELLICQNPLsttnaagtetiseAcgqcKACLLKKSDNYPD 83  Colwellia psychrerythraea 34H...
vbi:Avi_2156                        27 GHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSHPDPasapf----viadPdpnsLVGRQIASGASHN 102 Agrobacterium vitis S4...
WP_117561364                         8 nQPIFYNLIKNEFSQQRIPHAFLLIGNNTNIPL---TYLAMSLICDETL-------------AcencNDCRKVKENKYSD 71  Erysipelatoclostridium ramosum...
jgi:Ppha_0715                       81 VEYIfpvesalldpgDS-AKKenkrftdakerydall----------eqkkenpylspamerSMGIltEQIISLQHKALF 149 Pelodictyon phaeoclathratiforme BU-1...
Q6F0E2                              70 FVVL-----------GD-GSL-----------------------------------------AINK--NDVVELMQKFSL 94  Mesoplasma florum...
jgi:Sterm_3651                      77 IEII-----------NK-DEQ-----------------------------------------GVKI--DDVREIILNAIE 101 Sebaldella termitidis ATCC 33386...
CAX37233                            60 YCFI-----------IDgSQG-----------------------------------------EISK--ENLQEFLNRVSK 85  Mycoplasma hominis ATCC 23114...
BAH70031                            62 VQIF-----------ED-NGTe---------------------------------------nNLKK--DKIVAGFEESSL 88  Mycoplasma fermentans PG18...
WGS:AAXU:1101174000280_ALPR1_05180  78 LNFAfp-------siSK-EKKdsesedeknhelanfrnfvlenpygnihdfiyysgfekkqlNISK--NAAKRIIQSLSL 147 Algoriphagus machipongonensis...
BAI65570                            80 FTHF-----------ST-EAT-----------------------------------------HISI--DEARELVMKAQD 104 Rothia mucilaginosa DY-18...
Q482J4                              84 HLLL-----------KS-ENK-----------------------------------------TLGV--DDIRRGNAFLEK 108 Colwellia psychrerythraea 34H...
vbi:Avi_2156                       103 LLHIa---------rPV-DEKtgr-----------------------------------vksSITV--EEIRKAGHFFSQ 135 Agrobacterium vitis S4...
WP_117561364                        72 IIRF-----------NG-KDN-----------------------------------------SIKK--GNIELIQDTFKK 96  Erysipelatoclostridium ramosum...
jgi:Ppha_0715                      150 MPSE-GSKKIFIISQAERLHPSAANKLLKLLEEPpAHVVFILVSSRPEALLPTIRSRCQAVRFSRIT 215 Pelodi...
Q6F0E2                              95 TTNEvNKFKVYVLSNAENLKNESANSLLKFIEEPpENTIAILLTKNKSQVLPTIKSRCKLIVLENEN 161 Mesopl...
jgi:Sterm_3651                     102 SPYK-AKKKVYILNGVEKLRKESANALLKIIEEPpKNLYFILLSKSLNII-PTIKSRVMTFVIKPLD 166 Sebald...
CAX37233                            86 SSLFaNKYKFLIIKCVENITLKAANSILKFLENPpFNTIILLHTIKPQNVLKTIKSRCFIIDIRDDF 152 Mycopl...
BAH70031                            89 SSFVeGQKKITVFKNVENASKAALNSLLKIIEEPsDNVVFILTTNNITKVLETIKSRSITININAps 155 Mycopl...
WGS:AAXU:1101174000280_ALPR1_05180 148 MSFE-GGYKIMLIWGVEYLHPSAANSLLKIIEEPpAKTVFMLITSQPDQLLTTILSRTQKVLIRGFS 213 Algori...
BAI65570                           105 RPTV-GRWRVILVEDTERMPERTSNVLLKAIEEPpPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPT 170 Rothia...
Q482J4                             109 TAHL-GKVKTILIPQAQVMTIAAANALLKTLEEPsANSYIVLITDDLDSLLPTIISRCAVYAIRPMI 174 Colwel...
vbi:Avi_2156                       136 TSGG-GNWRIVILDPADDMNRNAANAILKVLEEPpKRSLFLVLSHAPGKLLPTIRSRCMPLKLQTLG 201 Agroba...
WP_117561364                        97 SSLE-GKAKIYIIENIEYATKEAMNTLLKMLEEPtEGIYAIFTANNASRVLPTILSRCQVIDIKPDs 162 Erysip...
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