Conserved Protein Domain Family
tRNA_anti-like

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pfam12869: tRNA_anti-like 
tRNA_anti-like
This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.
Statistics
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PSSM-Id: 338529
View PSSM: pfam12869
Aligned: 8 rows
Threshold Bit Score: 109.438
Threshold Setting Gi: 506406655
Created: 29-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q72D10         1 MTqffgaitaiaMLAALVGIILPKqllfflqphhrtRLKAFGFYFVialacslvgtalmspeektrqaqvRQEAEAVRAV 80  Desulfovibrio v...
Q0KFH4         1 MLn---------RTQQILVAIVAV------------AVLGMLWFAGndrrddv-----------gdaapeAQAEASAVPA 48  Ralstonia eutro...
Q3ZAA7         1 MEk---------TLNNKLVRALLI------------TSPLIIIALV------------------------SVGFSLNESI 35  Dehalococcoides...
ENY55754       1 ------dkeiemlLRFRVLPLVFV------------ISLLSGCGLA------------------------SKAFYSAGDK 38  Klebsiella pneu...
WP_015926374   7 kKs---------IFKRWWFW------------------AIIVIIFV------------------------VVAVNQQGDS 35  Clostridium cel...
EAQ41023       1 MK-----------RKKYILVILIL------------LILMFVIKY-------------------------AFVSEDY--K 30  Polaribacter sp...
WP_015482391   1 MK----------F-KKIVLPIIFL------------SIVVAVVA----------------------------Y-NVY-NK 27  Polaribacter sp...
WP_012859969   1 MR-------------NILVLFLTG------------FLSLAVIS-----------------------------NTVINNK 26  Sebaldella term...
Q72D10        81 EKAEKERAQKAEAeakakaeaqalqasRISARDLWAAYDANEVAADNKYKGKRILVVGTATDI-KKd-iTGSPY--VAMA 156 Desulfovibrio v...
Q0KFH4        49 SVVRGIPRDGTLDpisidperpadrlpQLQADTLLNDYRDNPKEADTRYLGQYLIVEGVASGI-RR---ERDQV--FVDI 122 Ralstonia eutro...
Q3ZAA7        36 TSLNNEDSSATAVisqpepaevitppvQIAARVLYEEYISNQTAADIKYKGSLVVVQGVLSGIc-----PATSTlqWVTL 110 Dehalococcoides...
ENY55754      39 LFQPGDDAVASMQ--------------TYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDI-RRksgIAGSYyfIVTM 103 Klebsiella pneu...
WP_015926374  36 DKTVSTNTDANSSvskstptqvkekpiVVKAEDLAATFDENEIKGNKLYKDKIAEITGTVSDI-GEs-lGQTYV--VLSS 111 Clostridium cel...
EAQ41023      31 QTENLIDKTPEL---------------VLNANDLTNAYVKNEENSNKLYAGKIIEVIGIVEET-TTl--NNRNT--IILA 90  Polaribacter sp...
WP_015482391  28 PHVDVADAKADV---------------TVTAENLFSEFSKDEVRANTQYLDKIIQVQGLIQNL-KVe--NELGV--VTLK 87  Polaribacter sp...
WP_012859969  27 QKNPAVSEETKTK--------------SANTYDLLEEYKKDASKRQPTYTGENITVSGVVVYKgPDi--HGLPS--LELS 88  Sebaldella term...
Q72D10       157 VDQFGLTGVNCIMEDEA-------------SAAKISRGAKIQVVGTVNGMS-----I--GNVFLRDCQ 204 Desulfovibrio vulgaris str....
Q0KFH4       123 RTNDPGVNVRALLLQRQicgpagrvceveaRATMVRRGQKVALECNGAGLA-----D--GAPLLRDCL 183 Ralstonia eutropha H16
Q3ZAA7       111 ETDGQNAFVKCQLSGDFtf----------lSSINDLIGQTVTIAGICQGFSgsyliI--DEIYTNDLP 166 Dehalococcoides mccartyi 195
ENY55754     104 RDEQNKTDKRLTFNFGShn---------saDVEALSNGSVATIVGQVHQVQ-----DstIPTLQNPKV 157 Klebsiella pneumoniae subsp...
WP_015926374 112 GKDFSITNVQCFFKDDNei----------sKVAEIKKGTKVTIVGQIDGKS-----I---NVAVNDCK 161 Clostridium cellulolyticum
EAQ41023      91 SE-HNSFGVICDINPNFtt---------efNQ--IQKNQKIQVKGICKGFl-----K--DVILLNCSI 139 Polaribacter sp. MED152
WP_015482391  88 TE-DDFGTVQCNLSREAts---------nfKL--LKKNDLVTIKGICTGYl-----M--DVVLVKSEI 136 Polaribacter sp. MED152
WP_012859969  89 DKVNGTSHVLCVFDSAD-------------SLNKISKGDNLTISGKFHIVSs----D--DMVVLKQSK 137 Sebaldella termitidis
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