Conserved Protein Domain Family
tRNA_anti-like

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pfam12869: tRNA_anti-like 
tRNA_anti-like
This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.
Statistics
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PSSM-Id: 378982
View PSSM: pfam12869
Aligned: 8 rows
Threshold Bit Score: 109.143
Threshold Setting Gi: 505295289
Created: 1-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q72D10            1 MTqffgaitaiAMLAALVGIILPKqllfflqphhrtRLKAFGFYFVialacslvgtalmspeektrqaqvRQEAEAVRAV 80  Desulfovibri...
Q0KFH4            1 ML---------NRTQQILVAIVAV------------AVLGMLWFAGndrrddv-----------gdaapeAQAEASAVPA 48  Cupriavidus ...
wugsc:KPN_03535   1 ML-----------LRFRVLPLVFV------------ISLLSGCGLA------------------------SKAFYSAGDK 33  Klebsiella p...
jgi:Ccel_3023     1 MAnek---vkkSIFKRWWFWAIIV------------IIFVVVAV------------------------------NQQGDS 35  Ruminiclostr...
jgi:Sterm_0496    1 MR-------------NILVLFLTG------------FLSLAVIS-----------------------------NTVINNK 26  Sebaldella t...
WP_015482391      1 MK----------F-KKIVLPIIFL------------SIVVAVVA----------------------------Y-NVY-NK 27  Polaribacter...
EAQ41023          1 MK-----------RKKYILVILIL------------LILMFVIKY-------------------------AFVSEDY--K 30  Polaribacter...
Q3ZAA7            1 ME---------KTLNNKLVRALLI------------TSPLIIIALV------------------------SVGFSLNESI 35  Dehalococcoi...
Q72D10           81 EKAEKERAQKAEAEAKAKAEAQALQASRISARDLWAAYDANEVAADNKYKGKRILVVGTATDI-KKdiTGSPY--VAMAV 157 Desulfovibri...
Q0KFH4           49 SVVRGIPRDGTLDPISIDPERPADRLPQLQADTLLNDYRDNPKEADTRYLGQYLIVEGVASGI-RR--ERDQV--FVDIR 123 Cupriavidus ...
wugsc:KPN_03535  34 LFQPGDDAVASMQ--------------TYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIrRKsgIAGSYyfIVTMR 99  Klebsiella p...
jgi:Ccel_3023    36 DKTVSTNTDANSSVSKSTPTQVKEKPIVVKAEDLAATFDENEIKGNKLYKDKIAEITGTVSDI-GEslGQTYV--VLSSG 112 Ruminiclostr...
jgi:Sterm_0496   27 QKNPAVSEETKTK--------------SANTYDLLEEYKKDASKRQPTYTGENITVSGVVVYKgPDi-HGLPS--LELSD 89  Sebaldella t...
WP_015482391     28 PHVDVADAKADV---------------TVTAENLFSEFSKDEVRANTQYLDKIIQVQGLIQNL-KVe-NELGV--VTLKT 88  Polaribacter...
EAQ41023         31 QTENLIDKTPEL---------------VLNANDLTNAYVKNEENSNKLYAGKIIEVIGIVEET-TTl-NNRNT--IILAS 91  Polaribacter...
Q3ZAA7           36 TSLNNEDSSATAVISQPEPAEVITPPVQIAARVLYEEYISNQTAADIKYKGSLVVVQGVLSGIc----PATSTlqWVTLE 111 Dehalococcoi...
Q72D10          158 DQFGLTGVNCIMEDEA-------------SAAKISRGAKIQVVGTVNGMS-----IGNVFLRDCQ 204 Desulfovibrio vulgaris str....
Q0KFH4          124 TNDPGVNVRALLLQRQicgpagrvceveaRATMVRRGQKVALECNGAGLA-----DGAPLLRDCL 183 Cupriavidus necator H16
wugsc:KPN_03535 100 DEQNKTDKRLTFNFGShn---------saDVEALSNGSVATIVGQVHQVQd---sTIPTLQNPKV 152 Klebsiella pneumoniae subsp...
jgi:Ccel_3023   113 KDFSITNVQCFFKDDNei----------sKVAEIKKGTKVTIVGQIDGK------SINVAVNDCK 161 Ruminiclostridium celluloly...
jgi:Sterm_0496   90 KVNGTSHVLCVFDSAD-------------SLNKISKGDNLTISGKFHIVSs----DDMVVLKQSK 137 Sebaldella termitidis ATCC ...
WP_015482391     89 E-DDFGTVQCNLSREAts---------nfKL--LKKNDLVTIKGICTGYl-----MDVVLVKSEI 136 Polaribacter sp. MED152
EAQ41023         92 E-HNSFGVICDINPNFtt---------efNQ--IQKNQKIQVKGICKGFl-----KDVILLNCSI 139 Polaribacter sp. MED152
Q3ZAA7          112 TDGQNAFVKCQLSGDFtf----------lSSINDLIGQTVTIAGICQGFSgsyliIDEIYTNDLP 166 Dehalococcoides mccartyi 195
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