5NW5


Conserved Protein Domain Family
Rif1_N

?
pfam12231: Rif1_N 
Click on image for an interactive view with Cn3D
Rap1-interacting factor 1 N terminal
This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Statistics
?
PSSM-Id: 463499
Aligned: 65 rows
Threshold Bit Score: 207.489
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5NW5_B        146 TFNNIIPILTTKN----VNEvdQKFNILIVNIEsiieiciphlqiaQDTLlSSSEKKNPfviR-----------LYVQIV 210  Saccharomyces...
XP_002110766   63 AYLTLTERLRHDDqdilVDEicRNATILCSVVK-------------RDILsDPRE-------------------LALASL 110 
XP_014352365   31 AYLTIANRLSGEEgkqfVAVveKHFSRLCKTFK-------------GNISsGNLE-------------------LSNAAL 78  
XP_005475278   33 AYLTIANRLSGEEgrqfLPAveKHFSRLGKAIL-------------AHIIsPNAE-------------------LSQAAL 80  
XP_007253540   32 AYLTIANRLSGEDgrqfFPIivKHFSRLGKSLQ-------------THISsENEE-------------------LSQAAL 79  
XP_005167632   32 AYITIANRLNGEEgrqfLPVvvKHFARLSKVLL-------------VHISsENEE-------------------LCQAAL 79  
E1C2U2         31 AHLSLVNRLSGEEgrefVAAvrKHFPRLCKVFK-------------AHISsENSE-------------------LSNAAL 78   chicken
Q5UIP0         29 AYLTLTSRMTGEEgkevITEieKKLPRLYKVLK-------------THISsQNSE-------------------LSSAAL 76   human
Q54JQ5         58 ENGMVISVLSNSDialrFINifQTHIICCNNNQstplpnlklknnnNNNNnNNNNNNNNnngNnnsilnnqidkLAINSL 137  Dictyostelium...
XP_004356223   24 AFNQLLGLLKEHv---eNDTisQSFKLTPQTITtyikiyqyyisssNNNQpSSDN-------------------LAISSL 81  
5NW5_B        211 RFFSAIMSNfkiVKWLTKrpdlvNKLKVIYRWTTGALRNENSNKIIITAQVSFLRDEKFGTFFLSNEEIKPIISTFTEIM 290  Saccharomyces...
XP_002110766  111 QALGYCFSLp-------------DDVAIGMLKALCSAIVSTHDKNRCTRALWCVAKQNINSDIVAN-QVSVVLPALEHVL 176 
XP_014352365   79 QALGFCVFHsnvASGLA------ASEVEELLSVLSSIAAVTSDKNTCTRALWVISKQSFSPEVVGK-KVPSIVSTVETLI 151 
XP_005475278   81 QALGFCVYHshvVSGVS------EVFAAEILSALCSLVSKATDKNTCTRALWVISKQSFPAEEVAK-KVPSILGTLESVW 153 
XP_007253540   80 QALGFCVFNtniVSGIP------AHFAEEILLALCALVLKSTDKNTCTRALWVISKQNFPAEVVSK-KTPEILKTLDAMQ 152 
XP_005167632   80 QALGFCVFHshiVSVIP------ANISENILSTLCNVVVKSKEKFTCTRALWVISKQNFPPEVASK-MAPEILKSLEAMQ 152 
E1C2U2         79 QALGFCVFNskiTSELS------ASEVEDLLSTLNSIAVKTSDKNTRTRALWVISKQTFPSEIIKK-EVSSLISTLETIL 151  chicken
Q5UIP0         77 QALGFCLYNpkiTSELS------EANALELLSKLND-TIKNSDKNVRTRALWVISKQTFPSEVVGK-MVSSIIDSLEILF 148  human
Q54JQ5        138 RSLGFFLYSssiIKCLSS-----DTQIREISTLLENTIQVTKNKNICNYAIWCFSSQSFPNGPISNKLPNTYCDLLENTP 212  Dictyostelium...
XP_004356223   82 RCLGYFIYSkfiVGHLL------ENQIKDISILLENTISTTKNKNICNFAVWCLTSQAFPNGPISTKLAKTYCNILETVP 155 
5NW5_B        291 ---EINSHNLIYEKLLLIRGFLSKYPKLMIETVTsWLPgevlpriiigdeiysmkiliTSIVVLLELLKkcldfvDEHER 367  Saccharomyces...
XP_002110766  177 lsgGFQSATVEFEAMNVILRLIEQVPNTMRANVAkWGI--------------------LVYPVMLNSAV------KVAER 230 
XP_014352365  152 tkgDVQSLVIEHEALNVVIRLLEQTPIQMREDAVrWAK--------------------VVIPLVVHSAH------KVRLK 205 
XP_005475278  154 kreDIHSVVMEHEALNVIIRMLEQVPTQMGEGAVqWAK--------------------LVIPLVVHSAS------KVRLR 207 
XP_007253540  153 t-rDIQSILMEHESLNVVIKLLDQAPTQMGQGAVfWAK--------------------LVIPLVVHSAS------KVRLR 205 
XP_005167632  153 t-rEVQSILIDHESLNVIIRLLEQAPVPMAVGAVcWAK--------------------LVIPLVVHSAN------KVRLR 205 
E1C2U2        152 tkgDVQSMIVEYEALNVVIRLMEQAPAQMGEEAVrWAK--------------------LIIPLVVHSAH------KVQLR 205  chicken
Q5UIP0        149 nkgETHSAVVDFEALNVIVRLIEQAPIQMGEEAVrWAK--------------------LVIPLVVHSAQ------KVHLR 202  human
Q54JQ5        213 ----FNSKTIENEVLNSFTTLLQQNIQLYLNSTEiWLP--------------------IIFNKILRLENl----pNITEK 264  Dictyostelium...
XP_004356223  156 ----FGSPTIEREVLLSFTHIYAQNPQIFLPMAHkWIP--------------------LLFDKMLANSStsgdvgKLSEE 211 
5NW5_B        368 IYQcIMLSPVCETIPEKFLSKLPLNSYDSANldkvtigHLLTQQIKNYIVVkNDNKIAMDLWLSMTGLLYDSGKRvydlT 447  Saccharomyces...
XP_002110766  231 ALVvMESALPLLLSSQEELIRVLIPDLKANL----------IDEMGKMMAE-RREISALRAWRYYIILLGKVLHR----S 295 
XP_014352365  206 AATaLEMGMPLLLQKQQEVASITEQLMTTKL----------IPELQKLFST-KNETFVLKLWPLFVRLLGKSLHR----G 270 
XP_005475278  208 AAAaMEMGMPLLLEKQNEVSAVIEPMMSTKL----------IPELQKLFMS-KNETNVLKLWPLFVKLLGKLLHR----G 272 
XP_007253540  206 AAAaLEMGLPLLLEKQQEVAAIVEPMMSTKL----------IPEMQKLFST-KNESNVLKLWPLFVKLLGKLLHK----G 270 
XP_005167632  206 AAAaLELGMPLLLEKQQEVAAIVEPMMSSVL----------IPEMQKLFAS-KNETNMLKLWPLFVRLLGKLLHK----G 270 
E1C2U2        206 GATaLEIGMPLLLQKQQEVAAVTEHLMTTKL----------ISELQKLFST-KNETYVLKLWPLFVKLLGKTLHR----S 270  chicken
Q5UIP0        203 GATaLEMGMPLLLQKQQEIASITEQLMTTKL----------ISELQKLFMS-KNETYVLKLWPLFVKLLGRTLHR----S 267  human
Q54JQ5        265 LKQiLEIVVNHYQMKNNVMSERVSEVLLSNC-------NSFMENMGKLFDT-KNEILSIQCWGIYVFFTGKLIF-----V 331  Dictyostelium...
XP_004356223  212 MIKrLILPAPPHELFAPEVYKELTQGLIQEI-------DVFISKLTSLND--KNELHCATIWGYFIYFLGEELFS----- 277 
5NW5_B        448 SESNKVWFDLNNLCFINNH-PKTRLMSIKVWRIIT--YCICTKISQKNQegnksLLSLLRTPF--------QMTlpyvND 516  Saccharomyces...
XP_002110766  296 GSLLNDMLKIMEMGFKNKS-IDILLEAYANWRHFIdsFVSYTDLTTSPK-----KRKLLSTPImi------------kSS 357 
XP_014352365  271 GSFINSLLHLEELGFRSGS-PVVKKIAFIAWKSLIdnFALNPDILCSSK-----RLRLLMQPLs--------------SI 330 
XP_005475278  273 GPFINSLLHLEELGFRSSS-PTIKKIAFLAWKSLIdnFALNPDILCSAK-----RMKLLMQPL----------T----SI 332 
XP_007253540  271 GAFINSLLYLEELGFRSSS-PNIKKIAFLAWKSLIdnFALNPEILCSSK-----RLKLLMQPL----------S----SI 330 
XP_005167632  271 GAFINSLLYLEELGFRNSS-PNIKKIAFIAWKSLIdnFALNPDILCSSK-----RLKLLMQPLs--------------SI 330 
E1C2U2        271 GSFINSLLQLEELGFRSGS-PVVKKIAFIAWKSLIdnFALNPDILCSAK-----RLKLLMQPL----------S----SI 330  chicken
Q5UIP0        268 GSFINSLLQLEELGFRSGA-PMIKKIAFIAWKSLIdnFALNPDILCSAK-----RLKLLMQPLs--------------SI 327  human
Q54JQ5        332 NKMANKVLGLAEKCFTHEN-KLVRIETYNSWKLLI--DSMDIEYISVDK-----RLELFCAPFmtgftserEAE------ 397  Dictyostelium...
XP_004356223  278 NSIINKILKLPEKWFVCLEnPELRCQTFISWRYLI--DALRQKSLVIPK-----RLNLIATPLslglkretNSN------ 344 
5NW5_B        517 PSAREGIIYHLLGVVYTAFTSNKnlstDMFELFWDHLI 554  Saccharomyces cerevisiae S288C
XP_002110766  358 EDTPPVLNESRILTWWHLIKSMN----KHSPALFKEIC 391 
XP_014352365  331 HVRTEAMALTKLEVWWYLIIRLG----AQLPVNFEQVC 364 
XP_005475278  333 NVRTEALLLTKVEVWWYLVIQLG----PNLSPNFDQVS 366 
XP_007253540  331 LVRTEALLLTKLEVWWYLVVKLG----PNLATNFEQVA 364 
XP_005167632  331 QVRTEALLLTKLEVWWYLAVKLG----PNLSANFEQVG 364 
E1C2U2        331 HVRTEALALTKLEVWWYLLMRLG----PQLPANFEQVC 364  chicken
Q5UIP0        328 HVRTETLALTKLEVWWYLLMRLG----PHLPANFEQVC 361  human
Q54JQ5        398 ------VKKTSFSTWMYFLKQFK----TQLFDVFNKVF 425  Dictyostelium discoideum AX4
XP_004356223  345 ------VKLNCFITWLYLLNALG----GDLPNTFHIVA 372 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap