Conserved Protein Domain Family
Tma16

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pfam11176: Tma16 
Translation machinery-associated protein 16
Proteins in this family localize to the nucleus. Their function is not clear.
Statistics
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PSSM-Id: 337938
View PSSM: pfam11176
Aligned: 133 rows
Threshold Bit Score: 96.4198
Threshold Setting Gi: 75030439
Created: 28-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74587973   17 STGSLHIKGRKFKQLNRATLRDKKLQQRKSQSLERKSNE-LSIVFFIQSLLQEkntandggdedeeegenfkefsNKKQF 95
gi 156364804  54 iKKAIHPNSRKASQLARSAHRDEKLQRKKDERTHMLEVKvGDKCRWFYEHIDD----------------------TKTRY 111
gi 196002383  11 SKKALHPYSRKAAQLTKEVHRVERVNKGKAERANVVITN-AKKLRWFQQQLDP----------------------DVTVY 67
gi 193683760   8 vLNANHPNSRKTKQLIKSKHKLAFRDKKKYINLAKPSSL-CEKLIWFRDNIDN----------------------TIEQY 64
gi 645014391  18 sstfIHPKSRKCIALVKKMKKDSKKEQAKRDTKLKQSLL-AEKLLWFQKHMDP----------------------NICPY 74
gi 198428736   9 STKLLHPNSRTALNIVQQSRRHNLKLNKAKERASRLDSI-VEKLLWFQSNLES----------------------DK-CY 64
gi 961439597   5 KGKILHPSSRKVKQKIARKHHGIKVAKRKKMRRSKDELK-RTKMLWFKENIPQ----------------------NRTSL 61
gi 313233423  12 qKKAPHPNSRKALKLAGAKIREERLLLKEDRKADQIAAR-IEMFKWFQDEMRErl-------------------aDLKDF 71
gi 512917897   8 LEKLKHPNSRKTMTLAKKLKKSEKKDQSKLGTHIKQNLI-GEKIMWFKERIPE----------------------ECEVF 64
gi 307208633  10 AKKILHPNSRKITAIAKKSKKMLNRQKIKMAGTIKQNLI-GEKIMWIQQNIVP----------------------DVCPY 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74587973   96 TLDEMKQIIEKFIHQNDDELQRLQSER----R--K--GR---P--PTNRQTILEEKLKYDLEIY-R-T-GFKIPDLTDQL 159
gi 156364804 112 TAQEVRDLIEMYLHRFDDELQKIEELN----NvvK--GR---QrmHVNKEDAMRTIIKVERELF-S-TgGLEIPDLTSAK 180
gi 196002383  68 TKSQLCQLIELYLERFNTELEEIANLK----K--L--GRkldS--KASREGNIQLILEQERQQYsS-S-GFEAPDLTREE 135
gi 193683760  65 TQDTLSLLIEKYLNRFDHEASIIKARH----K--DkgNR---R--FASREDVIRHTIEREREEY-N-TaGIEVPNILEAS 131
gi 645014391  75 TVELTGELIDNYIARNDEELEQIKLKRsigqN--R--NR---Q--HSGREDAIRITKEREINDY-Q-ScGMEIPNILNTA 143
gi 198428736  65 SKFEYTELVERYFTRFNDELEQIEIIRsvgcR--K--PI---Q--HGARERSIKLAQEHELMLF-NsT-GLELPDVFNKK 133
gi 961439597  62 TVDDLRSLIFRYLRRSKLDSKEEERET-------E--NC---S--ISMTIDMTNELLKQETQEFvT-T-GLLVPDLTSKQ 125
gi 313233423  72 TKADAQEFFTKYLHRFDDELNQTMETN----QtlK--RR---Q--TGSKLARINALLSKERQLIsS-T-GLDGPNLFNFK 138
gi 512917897  65 DKEQTLKLIESYLSRFDEELEQIALKNsigqR--K--NR---Q--HASREDVINMTRKKEQDEF-E-TcGIEIPDLMDPQ 133
gi 307208633  67 TAELTAELLLKYIGRNDEELEQIAIKHsvggK--R--GR---Q--HANREDIIRMTKKREQEEF-D-TcGIEIPDILNPV 135
                        170       180
                 ....*....|....*....|....*
gi 74587973  160 TVERIKEWNGtTGATTTMKFIRVSK 184
gi 156364804 181 NFELFKIWNCdMKNFAPIKMKLFSn 205
gi 196002383 136 NLKKFREWNGdLKGLPNVVTCKFye 160
gi 193683760 132 QLLYLRTWDGdIKYLPNFKIIRFrc 156
gi 645014391 144 ECNLLKKWKGeLKLLPNFKLCKFRK 168
gi 198428736 134 NFREFMEWDGtPQTLPRLKLMRFVK 158
gi 961439597 126 NLEKFMNWNGeVDRMASIPLIHVKK 150
gi 313233423 139 SLEDWLSWDGeFDSMPRLKTKKWTl 163
gi 512917897 134 QMNVLRNWNGeLRFLQHFKLKRFTK 158
gi 307208633 136 QYEMLRTWSGeLRLLPNFKFRRFGK 160
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