Conserved Protein Domain Family
Phage_RpbA

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pfam10789: Phage_RpbA 
Phage RNA polymerase binding, RpbA
Upon infection the RpbA encode phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Statistics
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PSSM-Id: 256166
View PSSM: pfam10789
Aligned: 8 rows
Threshold Bit Score: 110.627
Threshold Setting Gi: 75083389
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75079468   11 KDIQVKtIRTDSNphnqNRIRKSWVLNIDTNSARRLQSLPQE--TKFMLYGIIDNDVSDKWVEIMRRHYNDSLAAGAKLV 88
gi 75080307   14 QDIQGK-ISDSAD----TKIRKAWVLQTPDTLREMYQAMPLE--SRRALYKSLDKEVLELWISKMRQHREDALANGVKMI 86
gi 122146908  13 KDIQPKhVRSESNpqnqNKIRRAWVLSLSDNAMEVIQNKIKSapARHAYYEAIDREVSNKWIELMRKHTTESLNAGAKVL 92
gi 75093288   11 ADLKVTsIRTDANphnhNRVRKAWVLHCDDASAKKLQSLPQE--TRFMIYGFIDNDVSDMWIHLMRKHYKDSIEAGGKIV 88
gi 75083389    7 GDSLKT---LSAAyfyqNLARKNWVCLMTQEEYDRLQCLERD--VRFDVYKEFDDDVIETAIRLSQKFRAENLNCKREFV 81
gi 75090599   11 ADIRPL---SDNIyetsVKIRKAWVANISDVRANQLQAIEQS--VRFELYAEIDNLVRDMYVDLLQRRRAMILANGGYHV 85
gi 75084681   11 ADIRPM---SDNVfensVKIRKAWVSFISDIRANQLQALEQK--IRFELYAEIDKMVRDTYIDLLVRRRESILVNGGYHV 85
gi 33620621   13 ADIQNKkTSLEFDra-mNKIRKAWVLQMPESEKAKMKVIPQQ--ARFELYAHIDDMVQKEWIAAMRKYYDDSIAKGAKTI 89
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 75079468   89 IDRdGSERLEDDYCVDPDEQLLEAGAIV----ASQI 120
gi 75080307   87 RVN-GFYRLPDEYCDQQDQMLIDAALEV----IQLS 117
gi 122146908  93 MAH-GHERLEDDYCGNADERLIVAAQIVaetiAADF 127
gi 75093288   89 LDKdGSERLEDFYCVDADEQLIAAGEIV----ASKI 120
gi 75083389   82 ------------------EFFPDAAILV----YSEW 95
gi 75090599   86 KGMnDKPVFAKQFQYDTDELIITAAEMV----MADY 117
gi 75084681   86 KGMnDKKVLAKQFQYDTDELIIQAAQTV----MADY 117
gi 33620621   90 R---GKDILEKGYQIDTDELLIEAASVV----VTRL 118
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