4YIR


Conserved Protein Domain Family
BHD_3

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pfam10405: BHD_3 
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Rad4 beta-hairpin domain 3
This short domain is found in the Rad4 protein. This domain binds to DNA.
Statistics
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PSSM-Id: 337736
View PSSM: pfam10405
Aligned: 202 rows
Threshold Bit Score: 46.6475
Threshold Setting Gi: 802681633
Created: 28-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4YIR_A         457 ITKNTFGNIEV--F--APTMIPGNCCLVeN-PVAikaa-rflGVEFAPAVTSF---KFeR-GSTVK--PVLSGIVVAKWL 524
gi 255087476   297 VPKNDRGNVDL--H--GAALPPPGTVHVnL-PRIarva-ralGIDYASALVGF---EF-HrGGKTT--PKFEGVVVCEEF 364
gi 302787831   792 VPKNERGHVDV--W--SEKCIPPGTVHLaL-PRVtpvv-qmlGIDFAPAMVGF---EI-R-QGRSV--PVFQGVVVCDEF 858
gi 145357087   475 VPKNDRGNVDL--Y--GNALPPPGTVHVnL-PRIakta-ksmSIDYAPALVGF---EY-K-AGGKTl-PVFNGIVVCEEF 542
gi 569383687   285 VPKNDFGSVEL--W--SPQHLPSGCVHLsD-PFAvqac-ktlHLDYAKAVVGFlkdKG-L-FTRRK--PVFDGVVVCKEH 354
gi 299116035   871 VPKNDYGNVEF--FdcSPAFLPTGTAHLrG-EQIgrla-aklGVDYAPALTGF---ET-K-VGRQV--PVLDGIIVCKEQ 939
gi 303281374   426 VPKNERGNVDL--I--GGALPPPGTVHVsL-PRItrvvralrGIDFAAALVGF---EYqR-GGAVT--PKFDGVVVCEER 494
gi 302835584   788 VPKNERGNVECppL--VPE-LPRGTVHItLgPGLgalc-rtlGLDFAPGLVGF---EV-Q-GGRMV--PRLDGVVVCEEV 856
gi 1104641028  780 VPKNERGQVDV--W--SEKCLPPGTVHLrL-PRLvpia-krlQIDFSPAMVGF---EF----RNGRslPVYEGIVVCTEF 846
gi 571512005   710 VPKNERGQVDV--W--SEKCLPPGTVHLrF-PKAfsva-krlEIDYAPAMVGF---EF----KNGRsyPVFDGIVVCAEF 776

                   ....*
4YIR_A         525 REAIE 529
gi 255087476   365 EGRLR 369
gi 302787831   859 KDAIL 863
gi 145357087   543 KDDLL 547
gi 569383687   355 YDQVK 359
gi 299116035   940 SQMLR 944
gi 303281374   495 EEDVR 499
gi 302835584   857 SELVV 861
gi 1104641028  847 KDAIL 851
gi 571512005   777 KDVLL 781
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