Conserved Protein Domain Family
Zn-ribbon_8

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pfam09723: Zn-ribbon_8 
Zinc ribbon domain
This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Statistics
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PSSM-Id: 337488
View PSSM: pfam09723
Aligned: 570 rows
Threshold Bit Score: 26.0603
Threshold Setting Gi: 502713185
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q30Y30         1 MPIYEYTCKACHkDFEELVFGAgD--TVK-CPACGStKTEK 38  Desulfovibrio alaskensis G20
WP_012871763   1 MPIYEYRCHDCRrRVSIFFRSVaAvsAPQ-CPRCGGaNLER 40  Sphaerobacter thermophilus
CBE70171       1 MPIYEYACSSCRkRVSLLIRNI-HhpATPvCPRCGGrELTR 40  Candidatus Methylomirabilis oxyfera
WP_015050848   1 MPIYEYRCKVCDeRFS-VLASFsEksNVQ-CPKCGAkNVRR 39  Thermacetogenium phaeum
WP_015752706   1 MPIYEYFCQQCRrVHEVVTTRAsAaaDVP-CPDCGHgGMRR 40  Desulfohalobium retbaense
WP_013931621   1 MPFYRYTCDSCGyQKSVFHGIS-EapTVT-CDSCGK-TMRR 38  Thermotoga thermarum
WP_012002230   1 MPFYRYVCENCNsQKTVFHSIN-EdpEIF-C-ECGK-QMKR 37  Pseudothermotoga
WP_011993224   1 MPMYRYVCQKCGnEEVHLHGIN-DspNIT-CTKCGH-SMSK 38  Fervidobacterium nodosum
WP_012056510   1 MPMYRYVCKKCGnEKVELHSFN-EtlELF-CDNCGE-KMEK 38  Thermosipho melanesiensis
WP_014297191   1 MPIYRYVCQECGhEFTVMHGMN-EtpEVF-CEKCGG-VAKK 38  Marinitoga
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