1F6V


Conserved Protein Domain Family
Phage-MuB_C

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pfam09077: Phage-MuB_C 
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Mu B transposition protein, C terminal
The C terminal domain of the B transposition protein from Bacteriophage Mu comprises four alpha-helices arranged in a loosely packed bundle, where helix alpha1 runs parallel to alpha3, and anti-parallel to helices alpha2 and alpha4. The domain allows for non-specific binding of Mu to double-stranded DNA, allowing for integration into the bacterial genome, and mediates dimerization of the protein.
Statistics
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PSSM-Id: 370281
View PSSM: pfam09077
Aligned: 16 rows
Threshold Bit Score: 88.5274
Threshold Setting Gi: 157910415
Created: 3-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1F6V_A             3 RIAKRTAINKTKKADVKAIADAWQI--NGEKELELLQQIAQKPGALRILNHSLRLAAMTAHGKGEr-vNEDYLRQAfreL 79  Escherichia...
jgi:Xaut_4524    233 RVGARFVGASAKARDIEMLIAAWGV--TDEGVTKVLRAIARKPGALRLVGKTIRAASMYAEAEEIgqiSATHIRQAwsqL 310 Xanthobacte...
ACL05265         240 RIGRKLRLKKPSENDIKAICQAMGV--TEPMAQKYCVEIAHKPEAMRGMIETIQVAALFANGAGQe-lGLKHIKAAwkdr 316 Desulfatiba...
vbi:Avi_3067     265 RIGKRLQRVQPYPEDLQTYIAAWSV--TDPACIKFLMGIGMKGGAFRQIEKTMRMARMVATGEGTe-vSLKFIQAAwknr 341 Agrobacteri...
CAP44739         241 RVAKRVRLSRAKDADVLTLLDAWRI--EDAEARQLCLGIGRRPGALRGLSQTLRLASMFAATSGAarpTAEHVRDAwqdL 318 Bordetella ...
Q7VPI3           223 RIGKKCQIKASKKGDIKAVAQAWGLdvQDKDLMTVLYDIGGKAGGLRALTQYLRLAGMTAKGQGTg-iTLDLILTAqaeM 301 [Haemophilu...
VBC:UMN179_01599 223 RIGNHCGLKASTKGDIKAIASAWGLdiNDKDLMTVLFDIGGKAGGLRALTQYLRLAGMTAKGQGTa-mTLDLILQAkqqM 301 Gallibacter...
jgi:Tgr7_1664    243 RQGKWVGIQKTTAKDIAALVAAWHI--DDSRVMDAAQEIGSRPGGLRGLTKALRLASMFAAGEGGa-mQREHLVQAwrdL 319 Thioalkaliv...
USMARC:WQG_17120 223 RISKHVSIQKCKKNDVVAIANAWGLdtNDQEMMSLLSEIGAGGGGLRSLTQTLRLAGIHAKGQDSv-iTRDLVLAAqaeL 301 Bibersteini...
WP_006249679     231 RSAKRTSIQKTKKEDTQAVAKAWGLs-ENQEALKVMQAITETGGGLRILTHTLRLAAMVAKDRMIp-lTADLIQLArkdL 308 Mannheimia ...
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