5IC9


Conserved Protein Domain Family
Utp13

?
pfam08625: Utp13 
Click on image for an interactive view with Cn3D
Utp13 specific WD40 associated domain
Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end.
Statistics
?
PSSM-Id: 337133
View PSSM: pfam08625
Aligned: 158 rows
Threshold Bit Score: 87.9256
Threshold Setting Gi: 209878107
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5IC9_B          5 EQTLENYIHAGAYRDAIVLALQLNHPGRLLNLFTNVVTTRn----------------pD----------------PDSLT 52   Chaetomium th...
Q4N4H8        803 KSQINSLMLENNYRESLALSIKLNNIKLTNDILQKFRNKVi----------------fQ----------------GQKLE 850  Theileria parva
Q23DL4        944 QDNFKQLIRNQDYINAVKLAFRFNFVSKFHQALELMFHKKdfkneiiyseneikqikkN----------------NEEED 1007 Tetrahymena t...
XP_003288751  699 kQHLDTALRKKDYYGALKLALVLDQPNQTLNIFKSMY---------------------Y----------------DDETV 741  Dictyostelium...
XP_020431625  798 QQSLDTSLRQRDFKRALKLALILNQPRQSLNIFNMMM---------------------------------------ESEN 838  Polysphondyli...
XP_004359966 1095 QQMLDTSLLKKDYSRSLKLALILNQPHQSLRIFQTIVMEQ------------------Dkq------------ieENNQD 1144 Dictyostelium...
XP_004993215  655 DQELNNLIQSQEYAEAFRRAVNKN------RPRTLLRLLR------------------H----------------LRDAD 694  Salpingoeca r...
XP_002775600  743 DTRIQMLLLQGNHKEALDLALKLRRPGLMKTVLEDHAWKS------------------L----------------TTAME 788  Perkinsus mar...
XP_004035578  207 qdnyQQHLRNQDYLNAARVAFQYNFVSKFHQSLELLFNRQ------------------NfqneiiytvsdmqfqiNENNI 268  Ichthyophthir...
XP_001610205  663 rTQVESLDADGKYSEALCLALELRKPHMASKILKRRCTTQlfr-------------veK----------------DHEIE 713  Babesia bovis...
5IC9_B         53 GL-K-----AVDDVLAKLSDEQ-----I---FQLLLRLRDWNTNARTAPVAQRVLWALFKSHPANKLSSLSvkga----- 113  Chaetomium th...
Q4N4H8        851 ND-------PIDYIIERIREGD-----EkllNNLLNFIKIWITNRKDYLLANLFINKLLKELKIEQLLKVE--------- 909  Theileria parva
Q23DL4       1008 EFeK-----NIRELVTNLIELD-----I---NKLLIYIRDLNTMQKSSKVAQRLLNYVIRSIPIDDYQEISkkfkvpkkp 1074 Tetrahymena t...
XP_003288751  742 GV-S-----VVESCVSRLYDNE-----I---IKCLRYIRDWNTNSKFITISHVVLNAIIVNFKPDHLSRLSl-------- 799  Dictyostelium...
XP_020431625  839 GE-D-----LIKSTLKKFGKLD-----I---VKILKFVRDWNTNSKFVPVSQIILRSIMTMYLPSEIIKIH--------- 895  Polysphondyli...
XP_004359966 1145 NN-S-----LMKSVLSKLSTND-----L---LKCLKYIRDWNTNSRFVHVSQIVLYSILTLLKAEQLLSFEk-------- 1202 Dictyostelium...
XP_004993215  695 EM-D-----EVEPCIQQLDIEQ-----I---TRLLSFIENWNFNSKTSREAHELLNIIITTTSHDHLLKIP--------- 751  Salpingoeca r...
XP_002775600  789 GE-EapmdlDIGSWVEGLKEED-----L---EALVDVCGRWQTTARNCDLAHSVMNEIFKRLPASRLYRIE--------- 850  Perkinsus mar...
XP_004035578  269 ND-E-----EIQNLILNFMQLD-----F---NKLLYYIRDMNTIQKYSKVAQKVLNYVIMNTHIDQFEGLSknfkkqekq 334  Ichthyophthir...
XP_001610205  714 GD-------LFQSWVKGMKKSTdikrmL---TVAFDFIQLWISKGSTSWMANCLLSELLKQFKPCELFVVE--------- 774  Babesia bovis...
5IC9_B        114 --------------rghkSLNEVLDAIKVYTERHYKRIEELVDESYLVEYTL 151  Chaetomium thermophilum var. thermophilum...
Q4N4H8        910 ------------------GLLETIDFLLYNLSHHQNRLTNLQEKSYLMDMIT 943  Theileria parva
Q23DL4       1075 skkeqeeqtkipsdseksEFEQLLQVIISYSKRHAERMERFIKKSYYLDFVL 1126 Tetrahymena thermophila SB210
XP_003288751  800 -----------------nEFPKLLESLIPYTDRHFQRIDRMLQKTYLIDFTI 834  Dictyostelium purpureum
XP_020431625  896 ------------------ELPELLESLIPYNERHFQRLDRILQKTYLLDFTI 929  Polysphondylium pallidum PN500
XP_004359966 1203 ------------------ELATLLESMIPYNEKHFNRVDRIIQKTYLLDYTI 1236 Dictyostelium fasciculatum
XP_004993215  752 ------------------NCAKTLDSLIAYSERHMRRIQQLTQKTAFLDYTH 785  Salpingoeca rosetta
XP_002775600  851 ------------------GIASFLDSFVAYGAKHLRRLEAHTSRAFLCDGIL 884  Perkinsus marinus ATCC 50983
XP_004035578  335 kken-nkddkinnctpqqEFINMLEILISYSQRHGERMEKFIKKSYYLDLVL 385  Ichthyophthirius multifiliis
XP_001610205  775 ------------------GMSNRIESLLAYQASHLTRFINLSEKSHLLDVLL 808  Babesia bovis T2Bo
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap