Conserved Protein Domain Family
LVIVD

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pfam08309: LVIVD 
LVIVD repeat
This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise from 1-7 of 4-beta-strands which may associate to form a beta-propeller. The repeat copy number varies from 3-29. This repeat is sometimes found with the PKD domain pfam00801.
Statistics
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PSSM-Id: 285504
View PSSM: pfam08309
Aligned: 12 rows
Threshold Bit Score: 49.6421
Threshold Setting Gi: 74580558
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 74528084  508 AGHACDVAVSGNYAYVADSKNGLVVIDI---SNPSSPVMIGRYDT 549
gi 81625384  263 GGKAQSLWLYEGFLYIADFNGYLTVVDV---SDPSHMNEVFNVLT 304
gi 74580558   42 GRDVSNVAVSGDYAYIG-QGNELVILDIsdaSNLSNLSEMGRVTT 85
gi 81616834  227 GGDAMDIKVKGNYAYVAVQWNSLDIIDI---SNKAAPALSLSYMD 268
gi 74528084  248 AGIACDVSVLGKYAYVADNDKGLAIIDI---SNPSSPTLKGSCDT 289
gi 74580558  170 SGDAWDVAVSGKYAYVAFG-AGLVIVDI---SAPTSPTLVGSYDT 210
gi 74580558  255 DGNTRGVAVSGNYAYVVDGDKGLVIVDI---SNPTSPTLASSYDT 296
gi 74528084  164 AGSTGDIAVSGNYTFVADWDNGLMIVDI---SNPSSPVFKGSYDT 205
gi 74528084  373 PGSAQDVVVSGDYAYIADR-NDLVIVDI---SNPSSPILKETFNT 413
gi 74528084  290 PGYARDISASGNYVCIADK-NDFVIVDI---SNPSYPGLKEIYNT 330
gi 74528084  331 IGMSKSISISGNYAYVADWDNGLLIVDI---SNPSSPILKGSCNT 372
gi 74528084  550 AGYADRVSISGNYAYVA-VDNGLIIVDI---SNPSSPILKGIYAV 590
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