5FJ8,3AYH


Conserved Protein Domain Family
RNA_pol_Rbc25

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pfam08292: RNA_pol_Rbc25 
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RNA polymerase III subunit Rpc25
Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III.
Statistics
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Aligned: 25 rows
Threshold Bit Score: 118.152
Threshold Setting Gi: 122077652
Created: 3-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5FJ8_G           79 PFLGEIVTG-WISKCTAEGIKVSLlGIFDD-IFIPQNMLFEGCYYTPEESAWIWPMD----------------EETKLYF 140 Saccharomyce...
Q0UVV8           79 PFRGEIIYG-RIKSSSPDGIIIDL-DFTSE-VFVPYQNLFENSSFSQAEGVWVWNS-----------------DGTELFL 138 Parastagonos...
EAW15114        102 PFKGEIMLG-KISSATQQGIKIGV-EFFND-ILVPPDLLLDGARFDIADQVWVWENE----------------DGSTFYF 162 Aspergillus ...
jgi:OSTLU_15619  81 PFAGEVIEG-TLLSADAHGAHVSI-GFFKD-IFVPPTNMQAPSEYDDDSKVWMWDY-----------------DGELMEM 140 Ostreococcus...
KIS68918         79 PFTQEVLTG-KIKSSDEAGIRVSM-GFFDD-IYIPYHLIPKPCAFDHQERAWFWLYEarteqia--adpllsqPEERMYL 153 Ustilago may...
EDO81088         79 PYIGEIFTAfLVSQHPMHGLALST-GFCDT-IIVPPSNLPEYLMWNNERQGFTNLPD----------------FESELDF 140 Giardia lamb...
Q382L2          103 PTPGARVRA-TIGAQTREGIFLSL-DFFQFvFFVPGDQLIAPSFFDEGNQCWMLRVDdg------------tdEDAVNPY 168 Trypanosoma ...
Q557J3           78 PFKGEVLEG-VIKKSSRQSIQISL-GFFHE-IYLNPIELPNPSNYNQEEGLWYWEW-----------------NENQLFF 137 Dictyosteliu...
XP_773193        50 PFVGEVIVG-RVLSTTKTYIRVSL-GFFQD-IYIVPSLLPPNSAYDPQQKAFFWVAIddestltq-eqllntvISERLYI 125 Cryptococcus...
Q4CPV8          116 PTPGARLRA-TISAQTREGIFLTL-EFFQFvFFVPGDLLVAPSSYHEEKKCWVLHVEeeeeddveegeekgalESALNPY 193 Trypanosoma ...
5FJ8_G          141 DVNEKIRFRIEREVFv-dVKPKSPKEReleeraq----------leneieGKNEETPQNEKPPAYALLGSCQTDGMGLVS 209 Saccharomyce...
Q0UVV8          139 DKGEPVLFRVEQEEWf-dQRPTIVQ-------------------------KDEQGNVIEERGTAWRVIGSMNQAGLGPTL 192 Parastagonos...
EAW15114        163 DIGEVVRFRVEMEEWh-dQIPNAPD---------------------------LGDGAAIERKPPYSIIGSMQMAGLGPVS 214 Aspergillus ...
jgi:OSTLU_15619 141 KVGERFRFKVVAVRFp-eSPKTAEELAslt-----------------resGAAPRDGGDAAFAPMLVIADINEDGLGLCS 202 Ostreococcus...
KIS68918        154 DTAEAVRFTVESDAFw-dSEPGPGAATrsads-------------atqnaLHQKEHTTKETKPHYSITASIAGSGLGLVS 219 Ustilago may...
EDO81088        141 ELGGEIKIKVVDVIFrtnEDTTSMGLGnalege------------elsqdLIGSWGAIVNSKSKFIVVGSCTGPGLGDVR 208 Giardia lamb...
Q382L2          169 EKGDEVVVRVDRVIV---RDPVDLHRAegargstsnamgnadgtrsatggLKDSGREPQVEKWPMEVYGSFVGTGLGPVV 245 Trypanosoma ...
Q557J3          138 EDGGRVRFKIDQVEFnpeISQPAPSPKnvnteamds-----yslreykekQIENENLLKQVKSPLILKVSMREAGLGMVS 212 Dictyosteliu...
XP_773193       126 DLGEAIRFRVDSIEWq-dVRPTPQAMLae-------------------mnGEAVEGKDPIEKAGFKILATIAESGLGVTA 185 Cryptococcus...
Q4CPV8          194 ENGDEVIVKVEHVIV---RELVDFHSNvgtnsqnin------niiinsgvSADGKEGSPTSQSPMEVRGSFVGTGLGPVL 264 Trypanosoma ...
5FJ8_G          210 WW 211 Saccharomyces cerevisiae S288C
Q0UVV8          193 WW 194 Parastagonospora nodorum SN15
EAW15114        215 WW 216 Aspergillus clavatus NRRL 1
jgi:OSTLU_15619 203 WW 204 Ostreococcus lucimarinus CCE9901
KIS68918        220 WW 221 Ustilago maydis 521
EDO81088        209 WW 210 Giardia lamblia ATCC 50803
Q382L2          246 WF 247 Trypanosoma brucei
Q557J3          213 WW 214 Dictyostelium discoideum
XP_773193       186 WW 187 Cryptococcus neoformans var. neoformans B-3501A
Q4CPV8          265 WF 266 Trypanosoma cruzi
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