5IY6,6CNB,5IY6


Conserved Protein Domain Family
TF_Zn_Ribbon

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pfam08271: TF_Zn_Ribbon 
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TFIIB zinc-binding
The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ribbon like structure.
Statistics
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Aligned: 61 rows
Threshold Bit Score: 33.8141
Threshold Setting Gi: 81363704
Created: 3-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IY6_M  14 TCPNHPD-AI-L-----VEDYRAGDM-ICPEC-GLVVGDRVIDVGSEWRTF 55  crab-eating macaque
Q8ZYF7   2 VCPKCGS-RDiV-----LLPTN--EY-VCKKC-GYKWPMPQPDYMWIETEV 42  Pyrobaculum aerophilum
Q5SH22   4 TCPECGA-EL-R-----LENPELGELvVCEDC-GAELEVVGLDPLRLEPAP 46  Thermus thermophilus HB8
O34434   6 KCPNCGS-DM-------AFDSETGSL-SCSSC-GRQDNIESLPKENIAARF 46  Bacillus subtilis subsp. subtilis str. 168
A1RY32 114 VCPKCGT-RY-T-----VDEAENNNY-TCEVC-GEVLEPFDNTHRVEKLKR 155 Thermofilum pendens Hrk 5
Q58187 116 FCPNCNV-RF-T-----FEEAMDYGF-SCPGC-GNMLQEFDNSELIKDLEE 157 Methanocaldococcus jannaschii DSM 2661
O27705 117 VCVN-GH-YR-F-----TFDEATEENfTCPEC-GSKMEFMDNSEIIQEIKD 158 Methanothermobacter thermautotrophicus str. Delta H
O29501 119 ICPNMCVkVS-------YNDAMELNF-TCPRC-GAMLDYLDCSKAIEKIEE 160 Archaeoglobus fulgidus DSM 4304
Q6L077   5 KCPVCGN----------EYDINRSNY-LCDKC-GNILE-VIHENDFVKENF 42  Picrophilus torridus
P29083 128 KCPVCSS-TFtDleanqLFDPMTGTF-RCTFChTEVEEDESAMPKKDARTL 176 human
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