1IPA


Conserved Protein Domain Family
SpoU_sub_bind

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pfam08032: SpoU_sub_bind 
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RNA 2'-O ribose methyltransferase substrate binding
This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Statistics
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PSSM-Id: 311816
View PSSM: pfam08032
Aligned: 98 rows
Threshold Bit Score: 43.3753
Threshold Setting Gi: 81790698
Created: 25-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1IPA_A  30 LIEGAREIERALQA---G-IE---LEQA-LVWEGGLNPEEQQVYAALgRVG--RLALLEVSEAVLKKLSV-RDNPAGLIA 98  Thermus thermophilus
Q6A7V4  41 LVEGAQAVREALAW-----PG---KVNL-LATSDPARDA--EHVEVA-TCR--GVRVVVLTDEDVNALSD-TVTSQGIFA 105 Propionibacterium acnes
Q6AGD8  38 LLEGPQAVAEALAF---R-SEl--LVEL-YATPTALERH-QDIAQAA-AAA--GTQVEFVTEQVLGTIAD-TVTPQGFVA 105 Leifsonia xyli subsp....
Q828C9  57 LAEGPQAVREAAAH---RaADaatLVEL-FATAE-AAERYADIIGEA-RDA--GARVHLADEAVIADIST-TVTPQGLVG 127 Streptomyces avermitilis
Q9A907  33 LAEGLKIVIEAIDC---GhAP---KIVM-YGPDAADHPMLKKAVAAC-LKA--GGEVIEVNREILEKVSR-RDNPQAVVA 101 Caulobacter vibrioides
Q8KBA1  33 LAEGLRTVSELLQSlsdP-SM---LHAL-VFDEKAAGQLDGLERFAG--------KAWLAGPNEFKRLAQtTSP-QGVVA 98  Chlorobaculum tepidum
Q9CHW1  29 LIEGFHLLEEALKA---G-RS---IKQI-FVEENKLTKL--TEMIGS-EKLltDLSVNLVSKEVLKSLAD-SESPQGLIA 96  Lactococcus lactis su...
P74261  38 LLEGTHLLEVALAQg-kG-FNhgcFTAM-WQEKN-------PVLADR-LMAq-SVHSYLVSGEVLAKMAS-TVNPDGVVA 104 Synechocystis sp. PCC...
Q8Z0C3  42 LLEGTHLLEEACAM---D-YP---LEVV-CCTPEWEANH-TALWDDA-CSR--CDRYEIVSEEVLQAIAT-TVQPDGVVA 108 Nostoc sp. PCC 7120
Q7NN60  29 LVEGTHPVAAALAG---GwELefvCATEaWVGEH------PAMHTAL-SGR--AGRYETVAPAVIEALAD-TVHPSGVVA 95  Gloeobacter violaceus
1IPA_A  99 LARMPE 104 Thermus thermophilus
Q6A7V4 106 VCRQVT 111 Propionibacterium acnes
Q6AGD8 106 VARQFP 111 Leifsonia xyli subsp. xyli
Q828C9 128 ICRFLD 133 Streptomyces avermitilis
Q9A907 102 VFKQVF 107 Caulobacter vibrioides
Q8KBA1  99 AFRKPE 104 Chlorobaculum tepidum
Q9CHW1  97 EVTKIE 102 Lactococcus lactis subsp. lactis
P74261 105 TLTMDQ 110 Synechocystis sp. PCC 6803 substr. Kazusa
Q8Z0C3 109 TAKRSE 114 Nostoc sp. PCC 7120
Q7NN60  96 AVRRRA 101 Gloeobacter violaceus
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