Conserved Protein Domain Family
Rhamnogal_lyase

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pfam06045: Rhamnogal_lyase 
Rhamnogalacturonate lyase family
Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Statistics
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PSSM-Id: 283658
Aligned: 4 rows
Threshold Bit Score: -1
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9STV1   1 M----------------------------------------SNQDSVQLDVQESH-----VVMGNGKVKVTISKPDGFVT 35  thale cress
Q0J3T7  14 Mghppa-------------------------------tspaGATAGVSVKVSDRY-----VEIKNGIFELTLSNPDGIVT 57  Japanese rice
Q84W85   1 MeygapgmkagrrvltplfvlvfllqgvhsqtsrnkfniakAGHKLASPPVTLKKvgdnqVVVDNGIIDVTFSSPQGLIT 80  thale cress
Q9ZQ51   2 kvgapaskpgriivqvfllqlllllqsvhsqrsqnklnitkpGQNIPALTVQLRRvghdtVVVDNGIVQVTFSNPEGLIT 81  thale cress
Q0J3T7  14 Mghppa-------------------------------tspaGATAGVSVKVSDRY-----VEIKNGIFELTLSNPDGIVT 57  Japanese rice
Q84W85   1 MeygapgmkagrrvltplfvlvfllqgvhsqtsrnkfniakAGHKLASPPVTLKKvgdnqVVVDNGIIDVTFSSPQGLIT 80  thale cress
Q9ZQ51   2 kvgapaskpgriivqvfllqlllllqsvhsqrsqnklnitkpGQNIPALTVQLRRvghdtVVVDNGIVQVTFSNPEGLIT 81  thale cress
Q9STV1  36 GISYQGVDNLLETHNEDFNRGYWDLVWSDEGTPGttGKSERIKGTSFEVVVENEELVEISFSRKWDSSLQDSIAPINVDK 115 thale cress
Q0J3T7  58 GVRYNGVDNLMEILNKEDNRGYWDLVWSKLGERT--GIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDK 135 Japanese rice
Q84W85  81 RIKYNGLNNVLN--DQIENRGYWDVVWYKPGQVS---STDYLVGTKFDIVNQTSEQIEISFSRTF--SQRGSGIPLNVDK 153 thale cress
Q9ZQ51  82 GIKYHGIDNVLD--DKIDDRGYWDVVWYEPEKKQ---KTDKLEGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDK 156 thale cress
Q0J3T7  58 GVRYNGVDNLMEILNKEDNRGYWDLVWSKLGERT--GIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDK 135 Japanese rice
Q84W85  81 RIKYNGLNNVLN--DQIENRGYWDVVWYKPGQVS---STDYLVGTKFDIVNQTSEQIEISFSRTF--SQRGSGIPLNVDK 153 thale cress
Q9ZQ51  82 GIKYHGIDNVLD--DKIDDRGYWDVVWYEPEKKQ---KTDKLEGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDK 156 thale cress
Q9STV1 116 RFIMRKDVTGFYSYAIFEHLAEWPAFNLPQTRIVYKLRKDKFKYMAIADNRQRKMPLPEDRLGKRG--RPLAYPEAVLLV 193 thale cress
Q0J3T7 136 RFIVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYMALADDRQRIMPMPEDRVPPRG--QQLAYPEAVLLV 213 Japanese rice
Q84W85 154 RYIIRRGVSGIYMYAVLERLIGWPDVDMDQIRIVFKLNTTKFDFMAVSDNRQKIMPFDTDRDITKGraSPLAYKEAVHLI 233 thale cress
Q9ZQ51 157 RYIIRSGVSGLYMYGILERLEGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRENSKS----LAYKEAVLLT 232 thale cress
Q0J3T7 136 RFIVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYMALADDRQRIMPMPEDRVPPRG--QQLAYPEAVLLV 213 Japanese rice
Q84W85 154 RYIIRRGVSGIYMYAVLERLIGWPDVDMDQIRIVFKLNTTKFDFMAVSDNRQKIMPFDTDRDITKGraSPLAYKEAVHLI 233 thale cress
Q9ZQ51 157 RYIIRSGVSGLYMYGILERLEGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRENSKS----LAYKEAVLLT 232 thale cress
Q9STV1 194 HPVEDEFKGEV 204 thale cress
Q0J3T7 214 DPINPDLRGEV 224 Japanese rice
Q84W85 234 NPQNHMLKGQV 244 thale cress
Q9ZQ51 233 NPSNPMFKGEV 243 thale cress
Q0J3T7 214 DPINPDLRGEV 224 Japanese rice
Q84W85 234 NPQNHMLKGQV 244 thale cress
Q9ZQ51 233 NPSNPMFKGEV 243 thale cress
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