1EYS,2PRC,1PSS


Conserved Protein Domain Family
PRC

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pfam05239: PRC 
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PRC-barrel domain
The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.
Statistics
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PSSM-Id: 336073
View PSSM: pfam05239
Aligned: 117 rows
Threshold Bit Score: 29.9277
Threshold Setting Gi: 81766990
Created: 26-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1EYS_H 150 DPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVaa-------------nkKKVLLPIGfsRFDKKARKVKVDAIKA 216 Thermochromatium tepidum
Q58326   7 DILDKPIYTTTAIYVGKVYDVMLDLNKGVISGLIVSDiqngclk---dyvtdpsKKVVLPFN--LITAIGNIILVKPPAD 81  Methanocaldococcus ja...
Q979P9  11 NLRGKYVYTNKGIFVGQVSDVILDFDNNVVHGLFIAKtnekl--------vkdgDPISIPYN--YVRSIGDIIILKSFPD 80  Thermoplasma volcanium
Q9HJM4  15 SLIGKDVYTIKGIKVGRVNDIVLDFDKNQIHGIFIMNtndrl--------vkngDPISIPFN--YVKAIGDIIILKSFPD 84  Thermoplasma acidophilum
O28740   9 TFFGMRVFTDEGRYVGRVEDVILDQNTKSIRGLAISDynkal-------idshaKGVIIPYR--VVKAVGDIIIIKDLFK 79  Archaeoglobus fulgidus
Q8PVJ8   7 SLFGLNIYTNNGVYVGKLQDLVIDVEEQKVTGLAVSDinrel-------fdissRGIIIPYR--WVITAADIIIVRDVIQ 77  Methanosarcina mazei
Q9HQW1  10 SLVGREVYSNNGVFVGEVEDIQLNLNAEAVTGLALTElnadlfa----aqmtgqKGVIVPYR--WVRAVGDIILINDVVE 83  Halobacterium salinarum
Q8U4G3   7 KIYGKQIYTTKGKYVGYVDEVIIDIDEGRGEVVLLALp---------------gERVGVPYE--RVTAVGDIILVEATTE 69  Pyrococcus furiosus
Q9V279   7 KLYGKLIYNTKGKYVGKVDEVVIDIKEREGRVLILALp---------------gERVGVPYE--KVVAVGDIILVQA-SE 68  Pyrococcus abyssi
Q8TV79   6 DLIGKPVIDSSAKHIGEVLDVEFDEESGEVTTLIVGHskrpgvlrkikwlggeeKAVRIPYS--NVVAIEDMVLVEGRWV 83  Methanopyrus kandleri
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