Conserved Protein Domain Family
TAF4

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pfam05236: TAF4 
Transcription initiation factor TFIID component TAF4 family
This region of similarity is found in Transcription initiation factor TFIID component TAF4.
Statistics
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PSSM-Id: 336071
View PSSM: pfam05236
Aligned: 75 rows
Threshold Bit Score: 115.419
Threshold Setting Gi: 992281024
Created: 24-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q177Z6       263 INDVAAMGGVNLAEETQRIL-------GS---TEFV-----------GT----QIRSCKDE----------IFLHMSALQ 307 yellow fever mo...
A5DYN3       264 LNDAIAAAGVDIQKEEELLQqrqlnrkPGa--PSEK-----------QD----GSKSQTQV----------PLLNPYHLS 316 Lodderomyces el...
Q59U67        87 LNDAIAAAGVDIQQEEEILLqqqlnrkSAegmASNL-----------KS----VIRSSKSP----------PFLHNYHLA 141 Candida albican...
XP_002418651  84 LNDAIAAAGVDIQQEEEILLqqq--lnRKs--AEGI-----------ASnlksVIRSSKSP----------PFLNNYHLA 138 Candida dublini...
CCE81230     203 LNDALVAAGVDLQQEEELLMqqqmnrsNRy--NLSQ-----------TG----LYRQPQREdv------gsLLLNPYHLA 259 Pichia farinosa...
XP_001385652  20 LNDAIAAAGVDIQREEELLTiqq-trtTDv--SRDL-----------RQ----FLRSSKPP----------AFLNPYHVA 71  Scheffersomyces...
XP_006685707 150 LNDALAAAGVDIQREEELLMqq---qlSRv--PQQP-----------QF----NQQRVAVS----------QFLNPYHVN 199 Candida tenuis ...
CCE44832      98 LNDAIAAAGVNIHEEEELLLqqqslrkNEa--TNEK-----------NV----LSRAPKVS----------PFLNPYHLA 150 Candida parapsi...
XP_011108727  73 LSDVLFSTGVDLQAEEQYLYndttpaaSFn--ASASisalqggiaaeQR----QINREEAEnsgklrhandPFLSNSNLQ 146 Dactylellina ha...
XP_002615740 268 LNDALAAAGVDIQREEELLSiqn--nrTAi--NLHQ-----------QQ----FANRQRQTfgp-----mgSFLHPYHVA 323 Clavispora lusi...
Q177Z6       308 AKIRGIVARHGL---E---E---PSSE-VAVLISHACQERLKNIVEKLAVVAEHRIDiikvd------------------ 359 yellow fever mo...
A5DYN3       317 AFLAKVSKTHQI---HqnfL---EDGN-LLNLISDACEDWLSHIASKALILSRHRRRgtqfslkkgg------------- 376 Lodderomyces el...
Q59U67       142 AFIDKVAKQNGI---QqnfL---MDGE-MLELISAACETWLSNLATKTIILSRHRRRgipvink---------------- 198 Candida albican...
XP_002418651 139 AFIDKVAKQNGI---QqnfL---MDGE-MLELISAACETWLSNLATKTIILSRHRRRgipvink---------------- 195 Candida dublini...
CCE81230     260 VYMQRVSKENGI---Q---QnffQDPE-LLELMSSSCEDWLSHIITKTIILSRHRRRgmfgnaak--------------- 317 Pichia farinosa...
XP_001385652  72 SFMNRVARENGV---QqnfL---QDGD-LLELMSASCEMWLSSILGKTVLLSRHRRRgipqptnakng------------ 132 Scheffersomyces...
XP_006685707 200 TYMQKSARENGVlqnF---L---QDPE-VLEIMSASCERWISDIVAKTIVMARHRQNsapigk----------------- 255 Candida tenuis ...
CCE44832     151 AFLGKVAKTHQI---NqnfL---EDGD-MLNLVSGACETWIAQIASKAITISRHRRRggvlttsk--------------- 208 Candida parapsi...
XP_011108727 147 AKIHQKLVDQRLg--S---S---GNPDhFSELISIAIQERMRELVTTATVYARHRRQgntlkglgewadiafgetegrng 218 Dactylellina ha...
XP_002615740 324 LFMNRTARENGV---AqnfM---VDPE-MLDFMSAACKEWLSSIVMKTIALARHRRRgipafnnkngn------------ 384 Clavispora lusi...
Q177Z6       360 -----------------------------------pryeVTKDVRGQIKFLEELDKAEQKRHEEqE-REML--------- 394 yellow fever mo...
A5DYN3       377 ------------------------------lssltqlsqQRSAVSKELRNLALRQKEMEEKRVQkrivLGL--------- 417 Lodderomyces el...
Q59U67       199 --------------------------------ksgsssvPRSEISKELRSLALKQKEMEEKRVNkrvmLGL--------- 237 Candida albican...
XP_002418651 196 --------------------------------ksgsssvPRSEISKELRSLALKQKEMEEKRVNkRvMLGL--------- 234 Candida dublini...
CCE81230     318 -------------------------------nkkppvntQRSELSRELRNIALKQKELEEKRVAkRvALGI--------- 357 Pichia farinosa...
XP_001385652 133 -----------------------------kkassnansaPRSELSKELRNLAVRQKELEERRISkRiMLGL--------- 174 Scheffersomyces...
XP_006685707 256 ----------------------------------skttsGKSDMYSELRGLAKKHRELEEQRVErRiALGL--------- 292 Candida tenuis ...
CCE44832     209 -------------------------------kngtisssQRSAVSRELRNIAVKQKELEEKRVSkRiALGL--------- 248 Candida parapsi...
XP_011108727 219 rlrseqlegdtapspggvisrkrsfavanatsqtprqpsLVSETAKSLRQIATDERLIEEARIAaR-MARIngtkpgtpa 297 Dactylellina ha...
XP_002615740 385 ----------------------------sggkpksippsQRSEVSKELRNLALRQKEQEERRVAkrlaLGL--------- 427 Clavispora lusi...
Q177Z6       395 ------MRAAKSRSKTEDPEQAKL-KAK--AKEMQRAEMEELRQR-DANLTALQA-IG-P-RKKpkle------------ 449 yellow fever mo...
A5DYN3       418 ------EKSSG--NGTDDAANGKP-GSEetL------------HR-AANATAAMM-AT---GKKkysw------------ 459 Lodderomyces el...
Q59U67       238 ------EKSTKDASKNDENGESKA-GAEetL------------HR-AANATAAMM-TMnP-GRKkysw------------ 283 Candida albican...
XP_002418651 235 ------EKSTKDASKNDENGESKA-GA------------EETLHRaANATAAMMT-MN-P-GRKkysw------------ 280 Candida dublini...
CCE81230     358 ------EK-DPSDSSWNESGSGKA-DA------------EETLHR-AANATAAMM-AN-P-GRKkysw------------ 401 Pichia farinosa...
XP_001385652 175 ------EK------NGADPDGDQNgDSK--AGA------EETLHR-AANATAAMM-TM-KtGVKkysw------------ 219 Scheffersomyces...
XP_006685707 293 ------EKSDDNGK-----YENKA-GSE---ETLHRAANATAAMM-TSN----------P-GRKkysw------------ 333 Candida tenuis ...
CCE44832     249 ------EKSAND-SNDGENGDSKA-GA------------DETLHR-AANATAAMMtVG----KKkysw------------ 291 Candida parapsi...
XP_011108727 298 adgaggDSTNPLPGSVAPEPEKRM-TAKeaKKAQNSRLDEIQSHK-AANETASLM-LG-GgRKKkyswmsagggaggggg 373 Dactylellina ha...
XP_002615740 428 ------EKSDD----VAPETGNKV-GAEetL------------HR-AANATAAMM-TMnP-SRKkysw------------ 469 Clavispora lusi...
Q177Z6       450 -----------egaTTtVT-----PGASGIGVGASGKTatp----------------------------lrPRIKRVNLR 485 yellow fever mo...
A5DYN3       460 ----------mssgGGgAG-----SIGSLGDDARGSGVgiggggvgggdsktkqsailsargdnglryrdlRSTNAIVLK 524 Lodderomyces el...
Q59U67       284 ----------mtssATaGG-----GSDFGKSSGGSSKDsgkhqspiisv-----------rgdnglrfreiRSGNSIIMK 337 Candida albican...
XP_002418651 281 ----------mtssTTvGG-----GSDFGKSSSGTSKDsgklqspiisv-----------rgdnglrfreiRSGNSIIMK 334 Candida dublini...
CCE81230     402 ----------mnsgSNaSN-----TDESSADKSGARQStlisvrgd-----------------nglryreiRTGNTVTVK 449 Pichia farinosa...
XP_001385652 220 ----------mtstSSaGAdtakaGADTEKGKQSALLSvrgdng---------------------lrfreiRSGNTITMK 268 Scheffersomyces...
XP_006685707 334 ----------mtsgAGgPN-----GGSAGVSEKDSNSKrshllssrg---------------dngirlnntRITQAVTMK 383 Candida tenuis ...
CCE44832     292 ----------mnssANgGG-----VGSDVDGKGGSSSNkgkqspiisar------------gdsglryrevRAGNSIVLK 344 Candida parapsi...
XP_011108727 374 sgastpsrlpgtpgATtGT-----PGATVAAAISNGPVmywgkrm-------------------gewneqgERGKGVQLR 429 Dactylellina ha...
XP_002615740 470 ----------mtsgASdGG-----DAGKASPAKDSSskqsslistr---------------gdnglryreiRTGNMVTTK 519 Clavispora lusi...
Q177Z6       486 DMLFYLEQEKESCRSQMLYKA 506 yellow fever mosquito
A5DYN3       525 DLLNALEGEKKGTQHAITKGY 545 Lodderomyces elongisporus NRRL YB-4239
Q59U67       338 DLLGAIEDEKMGTRNAVIKGY 358 Candida albicans SC5314
XP_002418651 335 DLLGAIEDEKMGTRNAVIKGY 355 Candida dubliniensis CD36
CCE81230     450 DLLSALEDERMGSEKALLKGY 470 Pichia farinosa CBS 7064
XP_001385652 269 DILGAIEGERMGTQRAIIKGY 289 Scheffersomyces stipitis CBS 6054
XP_006685707 384 DLLAAIEDERMNVQNALVKGY 404 Candida tenuis ATCC 10573
CCE44832     345 DLLGAIENEKRGTQEAVVKGY 365 Candida parapsilosis
XP_011108727 430 DWTLALEADGRERKS-LQKGY 449 Dactylellina haptotyla CBS 200.50
XP_002615740 520 DLLGVLEDERMGTSKALIKAM 540 Clavispora lusitaniae ATCC 42720
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