5FJ8


Conserved Protein Domain Family
RNA_pol_Rpc4

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pfam05132: RNA_pol_Rpc4 
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RNA polymerase III RPC4
Specific subunit for Pol III, the tRNA specific polymerase.
Statistics
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Aligned: 178 rows
Threshold Bit Score: 53.5791
Threshold Setting Gi: 124446406
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5FJ8_N       301 PERFMVFQLPTRLPAferpavkeekedmetqasdps-------------------------------------------- 336 Saccharomyces c...
Q4YZM1       194 ERFFFSIQLPNMLPEvikdkrrsnssipnynrikgktyndiekkk---------------------------yineikne 246 Plasmodium berghei
Q8IKK2       198 EPFFFSIQLPNMLPAllskeeeeqngeqtkndtkqndqtekn---------------------------------ekkkk 244 Plasmodium falc...
ESS33491     391 gtdflhicFPSLFPPmdrqamnearqaraaerearrcntrgardgdasecgsqnatkdsatqgakagvrsgapgngkkss 470 Toxoplasma gond...
EZG44844     182 vrnwTLIQLPTMLPAmdreameqqrdqselalmdpeereaal----------------------------------taka 227 Gregarina nipha...
EEH59882      98 ngRYLVLQLPHDLDHsvefltmrspgeavisqgkadanl----------------------------------------v 137 Micromonas pusi...
EJK61767     328 tGSWFLMKFPTRLPHldeestssssrkpnaavklesaeegmpdavts-----------------------ssmdvtgevg 384 Thalassiosira o...
EED86486     358 nNSWFLMKFPTRLPHldnnsmvsstksgkkavkaevdedglelvgsanv-------------------dtsmdiptaats 418 Thalassiosira p...
A0CFC2       132 rdghcIIQLPNKLPFhdigktqkyveevkgdqaqkqlkdyy------------------------------------dec 175 Paramecium tetr...
XP_002260232 198 EPFFFSMQLPNMLPAllrneeqnenkdditnkrdrqpagckteek---------------------------eqmekkke 250 Plasmodium know...
5FJ8_N       337 -kkkknikkkdtkdalstrelaGKVGSIRVHKSGKLSVKI---------------------------------------- 375 Saccharomyces c...
Q4YZM1       247 enivenqnkknyelsnintlpnGKFGKLIIYKNKKIKMKI---------------------------------------- 286 Plasmodium berghei
Q8IKK2       245 siinksstndsyqlsnihtipnGKFAKLIIYKNKKIKMKI---------------------------------------- 284 Plasmodium falc...
ESS33491     471 ktsqpakpvgpspplplaslpdGRIGKLLLHRSGRVELRLlsamahksgcslasksdcgsgssadmqddergkglggtlt 550 Toxoplasma gond...
EZG44844     228 kirhketfdnkylptqlaglpeGYLGDLLVHESGRVTLQI---------------------------------------- 267 Gregarina nipha...
EEH59882     138 tdssiqdqlfeptshklsseadRQVGELTLQNDGTVEVRF---------------------------------------- 177 Micromonas pusi...
EJK61767     385 spmfpssegprgyddtlkdaapGRYGKIVVRKSGRTELVI---------------------------------------- 424 Thalassiosira o...
EED86486     419 vsssatvggalgyddtlkdcapGKYGKIVVYKSGRTELVV---------------------------------------- 458 Thalassiosira p...
A0CFC2       176 ydssgiqlqkqftnlsnkadvgIHIGKISIAADGSAIWKA---------------------------------------- 215 Paramecium tetr...
XP_002260232 251 kkliqktnnsayelsnvstlpnGKFAKLIIYKNKKIKMKI---------------------------------------- 290 Plasmodium know...
5FJ8_N       376 --------GN-------VVMDIGKGAETTFLQDVIAL-SIADDaSS-AELLGRVDGKIVVTPQI 422 Saccharomyces cerevisiae S288C
Q4YZM1       287 --------NG-------ILFDINEGSQCTFSQEIGCYiKE-N--SE-FIFLGNCENKLIATPNI 331 Plasmodium berghei
Q8IKK2       285 --------ND-------ILFDINEGSACTFSQEIGCFiKE-N--SE-FIFLGNCDYKLVATPNI 329 Plasmodium falciparum 3D7
ESS33491     551 knksneepG--------MCFEVNIGSECTFAQEVGCLvED-T--SE-FLFLGKCNKRMVIAPDV 602 Toxoplasma gondii VEG
EZG44844     268 --------GN-------HYFDVNTGSDCNFSQEVGCYvDA-S--SE-FFFLGSCSKRMIVTPCV 312 Gregarina niphandrodes
EEH59882     178 --------TD-------AEFDVLHGSSYAHSEQFTCI-DSLE--ST-CTFLGQVRGRLVCVPCl 222 Micromonas pusilla CCMP1545
EJK61767     425 --------GGgadggeeVRLLIHEGLQYGFRQEAVSI-DP-N--EAlFVSLGDVKKSLVVTPDV 476 Thalassiosira oceanica
EED86486     459 --------GGgdsgrpeVRMLIHEGLQCGFRQEAVSI-DP-E--EAtFVPMGDVGKALVVVPDV 510 Thalassiosira pseudonana CCMP1335
A0CFC2       216 --------GR-------EEFEIVQGITQDLDQKCLII----NK-EDgKCGFIKVGEKFVITPNy 259 Paramecium tetraurelia
XP_002260232 291 --------ND-------ILFDVDEGSECTFSQEIACYiKE-N--SE-FIFLGNCDNKLVATPNI 335 Plasmodium knowlesi strain H
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