1OGC


Conserved Protein Domain Family
RbsD_FucU

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pfam05025: RbsD_FucU 
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RbsD / FucU transport protein family
The Escherichia coli high-affinity ribose-transport system consists of six proteins encoded by the rbs operon (rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six components, RbsD is the only one whose function is unknown although it is thought that it somehow plays a critical role in PtsG-mediated ribose transport. This family also includes FucU a protein from the fucose biosynthesis operon that is presumably also involved in fucose transport by similarity to RbsD.
Statistics
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PSSM-Id: 335986
View PSSM: pfam05025
Aligned: 304 rows
Threshold Bit Score: 84.3666
Threshold Setting Gi: 122420818
Created: 24-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1OGC_A         1 MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDG--VLKIDLSLKPGLPAFQDTAAVLAEEMAVEkVIAAAEI----- 73  Bacillus subtilis
Q985Q0         3 iGIPALLGPDLLATLRAMGHGDEIALVDGNYPAEEQak-----rLIRADGHHLIPVLDAILSVLPVD-DAVPEALfrasv 76  Mesorhizobium loti
WP_014182082   3 KGIDPLLTPDLLYALARMGHGDTIALVDRNFPAHSVnd-----rVIRLDGTDVVSAGRAVLGLLPLD-TFVAEPIarmav 76  Streptomyces bi...
XP_009039998  33 kGLDPILSAELLFTLRSAGHGDVIAVVDCNFPAVECasKTTTGDLITLAGVDCPTALGAIASVLPVD-LFVDDPLkhmsp 111 Aureococcus ano...
WP_012385785   3 KGIDPILSPEFLSILRAMGHGDEIAIVDANYPAEAHar-----rCVRADGHDLPALLDALLSLMPLD-RAVDEAVfrpvp 76  Beijerinckia in...
WP_012114436   3 KGIDPLLGPDLLATLRAMGHGDEIAIVDANYPAEAHar-----rLVRMDGHDAPRLVDAVLSVMPLD-TDVAEAAfrpca 76  Xanthobacter au...
WP_041722402   3 KGIDPLLSPELLATLRAMGHGDEIALVDGNYPGLEHar-----rLIRLDGHGVVRVLDAILSVLPID-DFVPQAIfratv 76  Agrobacterium t...
WP_012654242   3 kGLNPILNPELLATLRAMGHGDEIAIVDGNYPGLEHar-----rLVRLDGLGLIPVLDAILSVLPID-DFVPEAIfrstv 76  Agrobacterium v...
WP_014265382   3 KGIDPLLSPELLKVLSSMGHRHEIAIVDANYACDPGkv-----nVIRLDGVPAPAALRAVLSVLPLE-RNDPEGCwrmia 76  Granulicella ma...
CCX36692       7 KQ----FTPELLRLIMEMGHGEKILISDANYPWRSMgc-----eHVHVPVEHIEELLEDILYFFPVD-QAEADPVlmmes 76  Clostridium sp....
1OGC_A        74 KASN------QENAKFLENLFSEq-----eIEYLSHEEFKLLTKdAKAVIRTGEFTPYANCILQAGV 129 Bacillus subtilis
Q985Q0        77 KGNPsi---aDPVHHEIEAICARrap-grkVVALAGADFYARVKsAHAIVATSEPRLYANIIIRKGV 139 Mesorhizobium loti
WP_014182082  77 VGDAaa---ePPVQTDFVAAAEEasgrplaVETVERHAFYARARsAFAVVITGEDRPYGCFLLTKGV 140 Streptomyces bingchenggensis
XP_009039998 112 SPGNelpalgKEVHDDARAAVGTycd--adWQPVERFAFYEEARkAFAVVQCLERRPYGCFLIQKGV 176 Aureococcus anophagefferens
WP_012385785  77 AGDAkgleatAALHSEYETLVAKhdp-gikVVPLKGAAFYDRVKgAYAIVASGERRLYGNIVLRKGV 142 Beijerinckia indica
WP_012114436  77 FGDCar---eESVFSEFEAAIAArep-gfsLVPIAGPSFYDRVRaAYAIVASGERRLYGNIILRKGV 139 Xanthobacter autotrophicus
WP_041722402  77 RQDRda---iDPVHAEMIEVCARhvp-dikVVPLLPADFYERVKqTHALVQTSEPRLYGNIILRKGV 139 Agrobacterium tumefaciens
WP_012654242  77 GKDRda---lDPVHAEIIACCAVhep-kqpVVPLLGPDFYPRVKaAHTVVQTGEPRLYANVILKKGV 139 Agrobacterium vitis
WP_014265382  77 KSDPan---eQPIFLEFQQAIAEfedvemkLGTLSTADFKDRARgAYAVLVTGERRPYGNILLRKGT 140 Granulicella mallensis
CCX36692      77 SLES-------GAFERYQKLLSKeep-cvtLKTVGRFDFYDRASqAVGVVVTADTTKGGNILITKGV 135 Clostridium sp. CAG:1013
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