2HHP,4LT6


Conserved Protein Domain Family
PAP_RNA-bind

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pfam04926: PAP_RNA-bind 
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Poly(A) polymerase predicted RNA binding domain
Based on its similarity structurally to the RNA recognition motif this domain is thought to be RNA binding.
Statistics
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Aligned: 114 rows
Threshold Bit Score: 35.9553
Threshold Setting Gi: 378756776
Created: 6-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HHP_A       353 DFFFRYKFYLEITAYTRgSDEQHLKWsglveskvrllvmklevlagikiahpftkpfessyccpted------------- 419 baker's yeast
EJW75422     134 NFFSRYKHFLALLCLSA-TEQDELVWcglveskirfliaslerresirvc------------------------------ 182 Wuchereria banc...
Q17AA5       434 SFFFKYRHFIVLLVTSN-NADDHLEWcglveskirylilnlernqhinlahv---------------------------- 484 yellow fever mo...
Q9N6D7       374 SFFYRYRHFIVLLVNSQ-TADDHLEWcglveskvrllignlernphialahvnpkcfef--------------------- 431 fruit fly
EGD82594     347 PFFGVYSHYICVQALTN-SEQDRTLYeglvestvrnlvtslefhpavtyaipip-------------------------- 399 Salpingoeca ros...
EDQ85233     383 RFFDEYQYFVRVVASAA-TESDRTEFeglvestvrhlvlnlqytdnvaya------------------------------ 431 Monosiga brevic...
Q4DA83       371 KFFGEHKYYLHVLVSCT-DAEAYQGYvdavesrirflwagtaesrgyalenirhvrirlnprryeape------------ 437 Trypanosoma cruzi
CAM66686     374 PFFGKFQHYLQIKVSCS-DAEHYQAYadgvesririlwagnassrghtledyrqlrlhlnprrfedpeevqlrtrltska 452 Leishmania infa...
EHY66800     342 DFFTRHKTYFMIAMACD-NSKEFGRFmgfaetrvrmfaqklesienieyaytl--------------------------- 393 Nematocida sp. ...
6_pfamImport   1 LFFDRWRHFLRIQITAE-NADDFSRWfgwvesrlrhfflrleaipevqiypla--------------------------- 52 
2HHP_A       420 ------dyemiqdkygshktetalnalklvtdenkeeesikdapkaYLSTMYIGLDFNIENk---------kEKVDIHIP 484 baker's yeast
EJW75422     183 -----------------------hvhtkyyqprndpfpvqvslqnpRCRLWFIGLDLNKTVs----------RKIDIQHE 229 Wuchereria banc...
Q17AA5       485 --------------------npkcfeqheqnqterqresdgsrastLCSLWFIGLEFERSEn----------LNVDLTES 534 yellow fever mo...
Q9N6D7       432 -------------kkgqsannsqnnsgneddlkqsqgnqsavtsapFCSMWFIGLEFERSEn----------LNVDLTES 488 fruit fly
EGD82594     400 -------------------kafrrspekdpstlededtherppeycWRTLWFIGLVFDPKAt----------EQLDILTV 450 Salpingoeca ros...
EDQ85233     432 ----------------------maypkayhedpvadkdgteattgpWRTAWYLALEFGIKQegri---epapSKLDLQGP 486 Monosiga brevic...
Q4DA83       438 ----evetrarllkktsrssgggngsmevsshqtsgavddssspkiFSCHYFIGMSVDPKAt---------sGKIYLAPS 504 Trypanosoma cruzi
CAM66686     453 tgaaaasshtrgsvgsrtsgqlgdggsslvgsinakdssapsgptwFTAHYFIGMAVDTKVs---------sAKIDLAPA 523 Leishmania infa...
EHY66800     394 -------------------pknyhlegvtqkevpllkdlqcgdeeySFSVLFIGINFSSVKlpl-----nasKKMNLKKP 449 Nematocida sp. ...
6_pfamImport  53 -------------------rffdfkttrsedgdgtnadqnqeceelHTSWCFIALSFHIPKkaiasetggggYHVDLTSV 113
2HHP_A       485 CTEFV-NLC-RSFNEd-YgDHKVF---NLALRFVKGYDLPDEVFDENEKRP 529 baker's yeast
EJW75422     230 VQSFMdLLN-SMATTqnI-YVEGM---SVIPHYLRKAELVKWLKMEDLTRG 275 Wuchereria bancrofti
Q17AA5       535 IQSFTdSVH-KHAVHikL-LKDGM---KIEARHVRRKQLSQYLDPNLLKRE 580 yellow fever mosquito
Q9N6D7       489 IQNFTeHVM-MHGVNikM-LKEGM---TIDARHVKRKQLSLYLDSDFLKRE 534 fruit fly
EGD82594     451 MSDFErRVRfKESRMtrY-DPSM----RYTVDPMARDEIPTWLH-----AE 491 Salpingoeca rosetta
EDQ85233     487 LVAFYgRLRdRTVTMsrY-DETTM---NVDVQAMKQSKLPGYLYPGGVNPH 533 Monosiga brevicollis MX1
Q4DA83       505 IRAFH-GIV-RQLRQ--Y-KEGITrlpVITVEDIS--KIPAFVKSAAGFKE 548 Trypanosoma cruzi
CAM66686     524 IRTFH-TVV-RELRQ--Y-REGVTrlpVITVVDMA--RIPTFVKEAAGHVE 567 Leishmania infantum JPCM5
EHY66800     450 VQELK-----SSLEG--Y-EQEEEcelRYEAIPLKQKALAPILNLFIEKES 492 Nematocida sp. 1 ERTm2
6_pfamImport 114 IQEFA-FIV-DQWEQ----RHGGM---DLQVDHLMREQIPTWVV-----QS 150
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