4NAC,4HFG,2KM4,4FLB


Conserved Protein Domain Family
CTD_bind

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pfam04818: CTD_bind 
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RNA polymerase II-binding domain.
This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase II.
Statistics
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PSSM-Id: 335909
View PSSM: pfam04818
Aligned: 271 rows
Threshold Bit Score: 37.8827
Threshold Setting Gi: 402465448
Created: 24-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
4NAC_A        56 KLTFLYLANDVIQNS--KRKG------PEFt--KDFAPVIVEAFKHVss----eTDESCKKHLGRVLSIWEERSVY 117
gi 330812809 500 KLNILHVLNDCLHNSssk------rptPDDwvsDEFARNIKEYLPFIvgtvasnEPPENQEKVFKVLLIWENQKFY 569
gi 470236712 537 KLNILHVLNDSLHNSftf------rpsPEHl--DQFASSIQSYLPFIvastsaeEPPECQEKVLKVLNIWENNSIY 604
gi 674861093 283 QMHIVYLANDILFDSlqRR-Tnlh-efDNEa--LAFRPVLGSMLGKIyhc--phNKEANQSRLENLLQFWASKEVF 352
gi 731432618 327 QLHIIYLANDILFDSlqRR-Inph-elDNEa--LAFKPVLGSMLARIyhn--pqNKEENQSRLQKILQFWASKEVY 396
gi 242096758 293 QLHIIFLVNDILFESlqRR-Tnir-dlDNEa--IAFKSVLGSMLARVynn--sqSKDDNQTRIEKILQFWGSKEVY 362
gi 734367719 342 QLHIIYLANDILFDSlnRR-Tssn-dlDNEa--LAFKPVLGSMLARIyhn--pqSNEEYRKRMQQMVEFWSSKKVY 411
gi 302812635 278 QMNILYLVNDILFSSlqSR-Lntk-elDGVa--LAFRPVLSSILVAIyqn--prVNDAEREQVEKMLQFWRTKEVY 347
gi 302839358 351 QLHLIYLANDVLFKGlaQR-IslghstDDVa--AAFQTVIGAMLAAAynt--ggRSAKIRERLDKILRFWSEKHVY 421
gi 552812742 133 QLHILYLANDILFKAlsTRPQgagpdaDPVa--QAFRPRLGRMLRHAyls--ggQAPDAQQNLLRVVGFWGERGVY 204
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